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Difference between revisions of "TSS:Hg 100719.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|BSAP=
 
|BSAP=
−
|all_trans=ENST00000358127.8:77 uc003zzo.3:77 M96944:156 NM_001280554:-206 NM_001280553:-206 NM_001280552:-206 NM_001280551:-206 NM_001280549:-206 NM_001280548:-206 NM_001280547:-206 NM_001280555:-206 NM_016734:-206 NM_001280556:-206 NM_001280550:-206 NR_103999:-206 NR_104000:-206 ENST00000377853.6:221 ENST00000377840.6:221 ENST00000377852.6:221 ENST00000523241.5:221 ENST00000520154.5:221 uc064tbd.1:221 uc010mlo.3:221 uc010mlp.3:221 uc010mls.3:221 uc010mlr.3:221 AY463952:221 AY463953:221 AY463954:221 AY463955:221 AY463956:221 AY463957:221 ENST00000520281.5:231 ENST00000446742.5:231 ENST00000522003.5:231 ENST00000523145.5:231 ENST00000523493.5:231 ENST00000414447.5:231 ENST00000377847.6:231 uc011lpw.3:231 uc011lpz.3:231 uc011lpx.3:231 uc011lqc.3:231 uc011lqa.3:231 uc011lpy.3:231 uc064tbe.1:231 FJ626419:231 FJ626420:231 FJ626421:231 FJ626422:231 FJ626423:231 FJ626424:231 FJ626425:231 BC156189:231 BC156927:231 AB529192:231
+
|all_trans=ENST00000358127.9:0 ENST00000377852.7:0 ENST00000523241.6:0 NM_001280548:0 NM_001280556:0 NM_001280547:0 NR_104000:0 NM_016734:0 NM_001280550:0 NM_001280554:0 NM_001280553:0 NM_001280552:0 NM_001280551:0 NM_001280549:0 NM_001280555:0 NR_103999:0 ENST00000520154.6:77 M96944:156 ENST00000377853.6:221 ENST00000377840.6:221 AY463952:221 AY463953:221 AY463954:221 AY463955:221 AY463956:221 AY463957:221 ENST00000520281.5:231 ENST00000446742.5:231 ENST00000522003.5:231 ENST00000523145.5:231 ENST00000523493.5:231 ENST00000414447.5:231 ENST00000377847.6:231 FJ626419:231 FJ626420:231 FJ626421:231 FJ626422:231 FJ626423:231 FJ626424:231 FJ626425:231 BC156189:231 BC156927:231 AB529192:231
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.08
 
|cpg_percent=0.08
−
|distance=77
+
|distance=0
−
|distance_to_tss=212
+
|distance_to_tss=1
 
|end=37034273
 
|end=37034273
 
|end_of_center_position=37034268
 
|end_of_center_position=37034268
 
|entrez_id=5079
 
|entrez_id=5079
 
|gc_percent=0.567164
 
|gc_percent=0.567164
−
|gene_alias=ALL3
+
|gene_alias=ALL3|BSAP
 
|gene_description=paired box 5
 
|gene_description=paired box 5
 
|gene_id=5079
 
|gene_id=5079
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:8619
 
|hgnc_mgi_id=HGNC:8619
 
|nearest_ensembl=ENSG00000196092
 
|nearest_ensembl=ENSG00000196092
−
|nearest_promoter_id=NM_001280549
+
|nearest_promoter_id=NM_001280547
 
|nearest_refseq=NM_016734
 
|nearest_refseq=NM_016734
 
|nearest_unigene=Hs.654464
 
|nearest_unigene=Hs.654464
−
|num_trans=56
+
|num_trans=43
 
|species=human
 
|species=human
 
|start=37034261
 
|start=37034261
 
|start_of_center_position=37034267
 
|start_of_center_position=37034267
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000358127.8 uc003zzo.3
+
|transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100719.1
 
|tss_id=hg_100719.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=Q02548
+
|uniprot_id=E7EQT0 E7ES87 Q02548
 
}}
 
}}

Revision as of 15:26, 15 June 2021

Basic information about the TSS

TSS ID:hg_100719.1
Species:human
Chr:chr9
TSS Classification:yes
Start:37034261
End:37034273
Strand:-
TSS Score:1
Start of the center position in the TSS region:37034267
End of the center position in the TSS region:37034268



Gene and protein annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:0
GeneID:5079
HGNC/MGI_ID:HGNC:8619
UniProt_ID:E7EQT0 E7ES87 Q02548
Gene_name:paired box 5
Gene_symbol:PAX5
Gene_synonyms:BSAP
Gene_source:HGNC:8619



Transcript annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:0
Num_trans:43
All_trans:ENST00000358127.9:0 ENST00000377852.7:0 ENST00000523241.6:0 NM_001280548:0 NM_001280556:0 NM_001280547:0 NR_104000:0 NM_016734:0 NM_001280550:0 NM_001280554:0 NM_001280553:0 NM_001280552:0 NM_001280551:0 NM_001280549:0 NM_001280555:0 NR_103999:0 ENST00000520154.6:77 M96944:156 ENST00000377853.6:221 ENST00000377840.6:221 AY463952:221 AY463953:221 AY463954:221 AY463955:221 AY463956:221 AY463957:221 ENST00000520281.5:231 ENST00000446742.5:231 ENST00000522003.5:231 ENST00000523145.5:231 ENST00000523493.5:231 ENST00000414447.5:231 ENST00000377847.6:231 FJ626419:231 FJ626420:231 FJ626421:231 FJ626422:231 FJ626423:231 FJ626424:231 FJ626425:231 BC156189:231 BC156927:231 AB529192:231



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NM_001280547
Entrez ID:5079
Nearest Unigene:Hs.654464
Nearest Refseq:NM_016734
Nearest Ensembl:ENSG00000196092
Gene Name:paired box 5
Gene Alias:ALL3
Gene Description:paired box 5
Gene Type:protein-coding
CpG%:0.08
GC%:0.567164
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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