Difference between revisions of "TSS:Hg 100746.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RRP40= | |RRP40= | ||
|Rrp40p= | |Rrp40p= | ||
| − | |all_trans=AF229833:108 AF151860:-110 CU679169:-137 KJ893776:-137 KJ898800:-137 DQ891938:-137 DQ895125:-137 BC008880:-139 AB528623:-141 BC002437:-149 | + | |all_trans=AF229833:108 AF151860:-110 CU679169:-137 KJ893776:-137 KJ898800:-137 DQ891938:-137 DQ895125:-137 BC008880:-139 AB528623:-141 BC002437:-149 AK290864:-150 ENST00000679059.1:-152 ENST00000465860.6:152 ENST00000496910.1:152 ENST00000465229.5:-154 AK289571:-154 ENST00000327304.10:-157 ENST00000396521.3:-157 ENST00000678588.1:-157 NM_016042:-157 AF281132:-161 LF206448:-164 MA442025:-164 ENST00000490516.5:184 NM_001002269:-185 |
|bA3J10.7= | |bA3J10.7= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=108 | |distance=108 | ||
| − | |distance_to_tss= | + | |distance_to_tss=162 |
|end=37784907 | |end=37784907 | ||
|end_of_center_position=37784902 | |end_of_center_position=37784902 | ||
|entrez_id=51010 | |entrez_id=51010 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=CGI-102 | + | |gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 |
|gene_description=exosome component 3 | |gene_description=exosome component 3 | ||
|gene_id=51010 | |gene_id=51010 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:17944 | |hgnc_mgi_id=HGNC:17944 | ||
|nearest_ensembl=ENSG00000107371 | |nearest_ensembl=ENSG00000107371 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016042 |
|nearest_refseq=NM_016042 | |nearest_refseq=NM_016042 | ||
|nearest_unigene=Hs.602571 | |nearest_unigene=Hs.602571 | ||
| − | |num_trans= | + | |num_trans=25 |
|p10= | |p10= | ||
|species=human | |species=human | ||
Revision as of 15:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37784901 |
|---|---|
| End of the center position in the TSS region: | 37784902 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF229833 |
|---|---|
| Distance: | 108 |
| Num_trans: | 25 |
| All_trans: | AF229833:108 AF151860:-110 CU679169:-137 KJ893776:-137 KJ898800:-137 DQ891938:-137 DQ895125:-137 BC008880:-139 AB528623:-141 BC002437:-149 AK290864:-150 ENST00000679059.1:-152 ENST00000465860.6:152 ENST00000496910.1:152 ENST00000465229.5:-154 AK289571:-154 ENST00000327304.10:-157 ENST00000396521.3:-157 ENST00000678588.1:-157 NM_016042:-157 AF281132:-161 LF206448:-164 MA442025:-164 ENST00000490516.5:184 NM_001002269:-185 |
TATA-Box annotation
| Distance to TSS: | 162 |
|---|---|
| Nearest PromoterID: | NM_016042 |
| Entrez ID: | 51010 |
| Nearest Unigene: | Hs.602571 |
| Nearest Refseq: | NM_016042 |
| Nearest Ensembl: | ENSG00000107371 |
| Gene Name: | exosome component 3 |
| Gene Alias: | CGI-102 |
| Gene Description: | exosome component 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
