Difference between revisions of "TSS:Hg 100748.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RRP40= | |RRP40= | ||
|Rrp40p= | |Rrp40p= | ||
| − | |all_trans=ENST00000465229.5:0 ENST00000327304. | + | |all_trans=ENST00000679059.1:0 ENST00000465229.5:0 ENST00000327304.10:0 ENST00000396521.3:0 ENST00000678588.1:0 NM_016042:0 AK289571:0 AK290864:0 LF206448:0 MA442025:0 BC002437:0 BC008880:0 AF281132:0 CU679169:0 KJ893776:0 KJ898800:0 DQ891938:0 DQ895125:0 AB528623:0 NM_001002269:-10 AF151860:24 AF229833:252 ENST00000465860.6:296 ENST00000496910.1:296 ENST00000490516.5:328 |
|bA3J10.7= | |bA3J10.7= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=37785082 | |end=37785082 | ||
|end_of_center_position=37785062 | |end_of_center_position=37785062 | ||
|entrez_id=51010 | |entrez_id=51010 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=CGI-102 | + | |gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 |
|gene_description=exosome component 3 | |gene_description=exosome component 3 | ||
|gene_id=51010 | |gene_id=51010 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:17944 | |hgnc_mgi_id=HGNC:17944 | ||
|nearest_ensembl=ENSG00000107371 | |nearest_ensembl=ENSG00000107371 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016042 |
|nearest_refseq=NM_016042 | |nearest_refseq=NM_016042 | ||
|nearest_unigene=Hs.602571 | |nearest_unigene=Hs.602571 | ||
| − | |num_trans= | + | |num_trans=25 |
|p10= | |p10= | ||
|species=human | |species=human | ||
| Line 33: | Line 33: | ||
|start_of_center_position=37785061 | |start_of_center_position=37785061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000465229.5 ENST00000327304. | + | |transcript_name=ENST00000679059.1 ENST00000465229.5 ENST00000327304.10 ENST00000396521.3 ENST00000678588.1 NM_016042 AK289571 AK290864 LF206448 MA442025 BC002437 BC008880 AF281132 CU679169 KJ893776 KJ898800 DQ891938 DQ895125 AB528623 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100748.1 | |tss_id=hg_100748.1 | ||
Revision as of 15:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37785061 |
|---|---|
| End of the center position in the TSS region: | 37785062 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679059.1 ENST00000465229.5 ENST00000327304.10 ENST00000396521.3 ENST00000678588.1 NM_016042 AK289571 AK290864 LF206448 MA442025 BC002437 BC008880 AF281132 CU679169 KJ893776 KJ898800 DQ891938 DQ895125 AB528623 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000679059.1:0 ENST00000465229.5:0 ENST00000327304.10:0 ENST00000396521.3:0 ENST00000678588.1:0 NM_016042:0 AK289571:0 AK290864:0 LF206448:0 MA442025:0 BC002437:0 BC008880:0 AF281132:0 CU679169:0 KJ893776:0 KJ898800:0 DQ891938:0 DQ895125:0 AB528623:0 NM_001002269:-10 AF151860:24 AF229833:252 ENST00000465860.6:296 ENST00000496910.1:296 ENST00000490516.5:328 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_016042 |
| Entrez ID: | 51010 |
| Nearest Unigene: | Hs.602571 |
| Nearest Refseq: | NM_016042 |
| Nearest Ensembl: | ENSG00000107371 |
| Gene Name: | exosome component 3 |
| Gene Alias: | CGI-102 |
| Gene Description: | exosome component 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
