Difference between revisions of "TSS:Hg 100828.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001099666: | + | |all_trans=ENST00000340434.5:19 NM_001366938:19 NM_001366940:19 NM_001366939:19 NM_001099666:19 NM_001366936:19 NM_001366935:19 NM_001366937:19 NR_159517:19 NR_159516:19 NR_159515:19 LF211284:27 MA446861:27 ENST00000472967.2:71 ENST00000474925.2:75 BC053622:88 ENST00000377200.9:89 AL832683:89 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
| − | |distance= | + | |distance=19 |
| − | |distance_to_tss=- | + | |distance_to_tss=-26 |
|end=69760045 | |end=69760045 | ||
|end_of_center_position=69760038 | |end_of_center_position=69760038 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:30449 | |hgnc_mgi_id=HGNC:30449 | ||
|nearest_ensembl=ENSG00000188647 | |nearest_ensembl=ENSG00000188647 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366936 |
|nearest_refseq=NM_001099666 | |nearest_refseq=NM_001099666 | ||
|nearest_unigene=Hs.744192 | |nearest_unigene=Hs.744192 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=69760029 | |start=69760029 | ||
|start_of_center_position=69760037 | |start_of_center_position=69760037 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001099666 | + | |transcript_name=ENST00000340434.5 NM_001366938 NM_001366940 NM_001366939 NM_001099666 NM_001366936 NM_001366935 NM_001366937 NR_159517 NR_159516 NR_159515 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100828.1 | |tss_id=hg_100828.1 | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 69760037 |
|---|---|
| End of the center position in the TSS region: | 69760038 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000340434.5 NM_001366938 NM_001366940 NM_001366939 NM_001099666 NM_001366936 NM_001366935 NM_001366937 NR_159517 NR_159516 NR_159515 |
|---|---|
| Distance: | 19 |
| Num_trans: | 18 |
| All_trans: | ENST00000340434.5:19 NM_001366938:19 NM_001366940:19 NM_001366939:19 NM_001099666:19 NM_001366936:19 NM_001366935:19 NM_001366937:19 NR_159517:19 NR_159516:19 NR_159515:19 LF211284:27 MA446861:27 ENST00000472967.2:71 ENST00000474925.2:75 BC053622:88 ENST00000377200.9:89 AL832683:89 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_001366936 |
| Entrez ID: | 375743 |
| Nearest Unigene: | Hs.744192 |
| Nearest Refseq: | NM_001099666 |
| Nearest Ensembl: | ENSG00000188647 |
| Gene Name: | protein prenyltransferase alpha subunit repeat containing 1 |
| Gene Alias: | - |
| Gene Description: | protein prenyltransferase alpha subunit repeat containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
