Difference between revisions of "TSS:Hg 100835.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000656832.1:-10 ENST00000670800.1:-407 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-10 |
|distance_to_tss=612 | |distance_to_tss=612 | ||
|end=70258274 | |end=70258274 | ||
| Line 10: | Line 11: | ||
|gene_alias=MAMDC2-AS2 | |gene_alias=MAMDC2-AS2 | ||
|gene_description=SMC5 antisense RNA 1 (head to head) | |gene_description=SMC5 antisense RNA 1 (head to head) | ||
| − | |gene_name=SMC5- | + | |gene_id= |
| + | |gene_name=SMC5 divergent transcript | ||
| + | |gene_source=HGNC:48718 | ||
| + | |gene_symbol=SMC5-DT | ||
| + | |gene_synonyms=MAMDC2-AS2 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:48718 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_039990 | |nearest_promoter_id=NR_039990 | ||
|nearest_refseq=NR_039990 | |nearest_refseq=NR_039990 | ||
|nearest_unigene=Hs.556816 | |nearest_unigene=Hs.556816 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=70258249 | |start=70258249 | ||
|start_of_center_position=70258261 | |start_of_center_position=70258261 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000656832.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100835.1 | |tss_id=hg_100835.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70258261 |
|---|---|
| End of the center position in the TSS region: | 70258262 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000656832.1 |
|---|---|
| Distance: | -10 |
| Num_trans: | 2 |
| All_trans: | ENST00000656832.1:-10 ENST00000670800.1:-407 |
TATA-Box annotation
| Distance to TSS: | 612 |
|---|---|
| Nearest PromoterID: | NR_039990 |
| Entrez ID: | 100507299 |
| Nearest Unigene: | Hs.556816 |
| Nearest Refseq: | NR_039990 |
| Nearest Ensembl: | |
| Gene Name: | SMC5 divergent transcript |
| Gene Alias: | MAMDC2-AS2 |
| Gene Description: | SMC5 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
