Difference between revisions of "TSS:Hg 100897.1"
From referenceTSS
| Line 2: | Line 2: | ||
|LTRPC3= | |LTRPC3= | ||
|MLSN2= | |MLSN2= | ||
| − | |all_trans=ENST00000377110. | + | |all_trans=ENST00000377110.9:-36 ENST00000377111.8:-36 AJ505026:-36 AJ505025:-36 ENST00000677713.2:-59 NM_001007471:-59 NM_001366148:-59 NM_001366147:-59 NM_001366152:-59 NM_001366151:-59 NM_001366145:-59 NM_001366146:-59 NM_001366149:-59 NM_001366150:-59 NM_001366153:-59 AK308682:125 BC172350:197 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=-36 | |distance=-36 | ||
| − | |distance_to_tss= | + | |distance_to_tss=65 |
|end=71121562 | |end=71121562 | ||
|end_of_center_position=71121557 | |end_of_center_position=71121557 | ||
|entrez_id=80036 | |entrez_id=80036 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=GON-2 | + | |gene_alias=GON-2|LTRPC3|MLSN2 |
|gene_description=transient receptor potential cation channel subfamily M member 3 | |gene_description=transient receptor potential cation channel subfamily M member 3 | ||
|gene_id=80036 | |gene_id=80036 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:17992 | |hgnc_mgi_id=HGNC:17992 | ||
|nearest_ensembl=ENSG00000083067 | |nearest_ensembl=ENSG00000083067 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366150 |
|nearest_refseq=NM_020952 | |nearest_refseq=NM_020952 | ||
|nearest_unigene=Hs.47288 | |nearest_unigene=Hs.47288 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=71121550 | |start=71121550 | ||
|start_of_center_position=71121556 | |start_of_center_position=71121556 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000377110. | + | |transcript_name=ENST00000377110.9 ENST00000377111.8 AJ505026 AJ505025 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100897.1 | |tss_id=hg_100897.1 | ||
Revision as of 15:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71121556 |
|---|---|
| End of the center position in the TSS region: | 71121557 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377110.9 ENST00000377111.8 AJ505026 AJ505025 |
|---|---|
| Distance: | -36 |
| Num_trans: | 17 |
| All_trans: | ENST00000377110.9:-36 ENST00000377111.8:-36 AJ505026:-36 AJ505025:-36 ENST00000677713.2:-59 NM_001007471:-59 NM_001366148:-59 NM_001366147:-59 NM_001366152:-59 NM_001366151:-59 NM_001366145:-59 NM_001366146:-59 NM_001366149:-59 NM_001366150:-59 NM_001366153:-59 AK308682:125 BC172350:197 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001366150 |
| Entrez ID: | 80036 |
| Nearest Unigene: | Hs.47288 |
| Nearest Refseq: | NM_020952 |
| Nearest Ensembl: | ENSG00000083067 |
| Gene Name: | transient receptor potential cation channel subfamily M member 3 |
| Gene Alias: | GON-2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
