Difference between revisions of "TSS:Hg 100929.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=1154 |entrez_id=23670 |gc_percent=0.542289 |gene_alias=- |gene_description=transmembrane protein 2 |gene_name=TMEM2 |gene_type=...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF345169:387 MA580746:387 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance_to_tss= | + | |distance=387 |
| + | |distance_to_tss=783 | ||
| + | |end=71767737 | ||
| + | |end_of_center_position=71767731 | ||
|entrez_id=23670 | |entrez_id=23670 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias= | + | |gene_alias=TMEM2 |
| − | |gene_description= | + | |gene_description=cell migration inducing hyaluronidase 2 |
| − | |gene_name= | + | |gene_name=CEMIP2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000135048 | |nearest_ensembl=ENSG00000135048 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_013390 | |nearest_refseq=NM_013390 | ||
|nearest_unigene=Hs.494146 | |nearest_unigene=Hs.494146 | ||
| − | |tata_box= | + | |num_trans=2 |
| + | |species=human | ||
| + | |start=71767723 | ||
| + | |start_of_center_position=71767730 | ||
| + | |strand=- | ||
| + | |tata_box=-56(GGCTTTAAAATC,-,0.00),-55(GCTTTAAAATCG,+,0.00) | ||
| + | |transcript_name=LF345169 MA580746 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100929.1 | |tss_id=hg_100929.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 15:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71767730 |
|---|---|
| End of the center position in the TSS region: | 71767731 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF345169 MA580746 |
|---|---|
| Distance: | 387 |
| Num_trans: | 2 |
| All_trans: | LF345169:387 MA580746:387 |
TATA-Box annotation
| Distance to TSS: | 783 |
|---|---|
| Nearest PromoterID: | NM_001135820 |
| Entrez ID: | 23670 |
| Nearest Unigene: | Hs.494146 |
| Nearest Refseq: | NM_013390 |
| Nearest Ensembl: | ENSG00000135048 |
| Gene Name: | CEMIP2 |
| Gene Alias: | TMEM2 |
| Gene Description: | cell migration inducing hyaluronidase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(GGCTTTAAAATC,-,0.00),-55(GCTTTAAAATCG,+,0.00) |
