Difference between revisions of "TSS:Hg 101019.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HOMG1= | |HOMG1= | ||
|HSH= | |HSH= | ||
| − | |all_trans=AF448232:12 BC156137:12 AY333282:-40 AY333285:-40 AY333286:-40 AY333287:-40 AY333288:-40 ENST00000449912.6:148 NM_001177310 | + | |all_trans=AF448232:12 BC156137:12 AY333282:-40 AY333285:-40 AY333286:-40 AY333287:-40 AY333288:-40 ENST00000360774.6:-42 NM_017662:-42 ENST00000449912.6:148 NM_001177310:148 AY333283:148 ENST00000359047.2:-215 AF350881:-215 AK057748:-215 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=48 |
|end=74887879 | |end=74887879 | ||
|end_of_center_position=74887874 | |end_of_center_position=74887874 | ||
|entrez_id=140803 | |entrez_id=140803 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=CHAK2 | + | |gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH |
|gene_description=transient receptor potential cation channel subfamily M member 6 | |gene_description=transient receptor potential cation channel subfamily M member 6 | ||
|gene_id=140803 | |gene_id=140803 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:17995 | |hgnc_mgi_id=HGNC:17995 | ||
|nearest_ensembl=ENSG00000119121 | |nearest_ensembl=ENSG00000119121 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017662 |
|nearest_refseq=NM_017662 | |nearest_refseq=NM_017662 | ||
|nearest_unigene=Hs.272225 | |nearest_unigene=Hs.272225 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=74887867 | |start=74887867 | ||
|start_of_center_position=74887873 | |start_of_center_position=74887873 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-81(GGCTGTAAAAGG,-,0.00) |
|transcript_name=AF448232 BC156137 | |transcript_name=AF448232 BC156137 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 15:33, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 74887873 |
|---|---|
| End of the center position in the TSS region: | 74887874 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF448232 BC156137 |
|---|---|
| Distance: | 12 |
| Num_trans: | 15 |
| All_trans: | AF448232:12 BC156137:12 AY333282:-40 AY333285:-40 AY333286:-40 AY333287:-40 AY333288:-40 ENST00000360774.6:-42 NM_017662:-42 ENST00000449912.6:148 NM_001177310:148 AY333283:148 ENST00000359047.2:-215 AF350881:-215 AK057748:-215 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_017662 |
| Entrez ID: | 140803 |
| Nearest Unigene: | Hs.272225 |
| Nearest Refseq: | NM_017662 |
| Nearest Ensembl: | ENSG00000119121 |
| Gene Name: | transient receptor potential cation channel subfamily M member 6 |
| Gene Alias: | CHAK2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(GGCTGTAAAAGG,-,0.00) |
