Difference between revisions of "TSS:Hg 100493.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |SPG80= | ||
|UAP= | |UAP= | ||
|UBAP= | |UBAP= | ||
| Line 5: | Line 6: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=916 |
|end=34179964 | |end=34179964 | ||
|end_of_center_position=34179959 | |end_of_center_position=34179959 | ||
|entrez_id=51271 | |entrez_id=51271 | ||
|gc_percent=0.313433 | |gc_percent=0.313433 | ||
| − | |gene_alias=NAG20 | + | |gene_alias=NAG20{{!}}SPG80{{!}}UAP{{!}}UBAP{{!}}UBAP-1 |
|gene_description=ubiquitin associated protein 1 | |gene_description=ubiquitin associated protein 1 | ||
|gene_name=UBAP1 | |gene_name=UBAP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165006 | |nearest_ensembl=ENSG00000165006 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016525 |
|nearest_refseq=NM_016525 | |nearest_refseq=NM_016525 | ||
|nearest_unigene=Hs.268963 | |nearest_unigene=Hs.268963 | ||
| Line 24: | Line 25: | ||
|start_of_center_position=34179958 | |start_of_center_position=34179958 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=31(CTTTTAAGACGC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34179958 |
|---|---|
| End of the center position in the TSS region: | 34179959 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 916 |
|---|---|
| Nearest PromoterID: | NM_016525 |
| Entrez ID: | 51271 |
| Nearest Unigene: | Hs.268963 |
| Nearest Refseq: | NM_016525 |
| Nearest Ensembl: | ENSG00000165006 |
| Gene Name: | UBAP1 |
| Gene Alias: | NAG20|SPG80|UAP|UBAP|UBAP-1 |
| Gene Description: | ubiquitin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.313433 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 31(CTTTTAAGACGC,+,0.00) |
