Difference between revisions of "TSS:Hg 100599.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |SIT-R= | ||
| + | |all_trans=AK093793:-41 ENST00000486859.5:106 AB527705:-194 ENST00000474403.1:-248 ENST00000259608.8:-269 NM_014450:-269 AK314758:-269 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance_to_tss= | + | |distance=-41 |
| + | |distance_to_tss=312 | ||
| + | |end=35650662 | ||
| + | |end_of_center_position=35650619 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=SIT | + | |gene_alias=SIT{{!}}SIT-R |
|gene_description=signaling threshold regulating transmembrane adaptor 1 | |gene_description=signaling threshold regulating transmembrane adaptor 1 | ||
|gene_name=SIT1 | |gene_name=SIT1 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
| − | |tata_box= | + | |num_trans=13 |
| + | |species=human | ||
| + | |start=35650575 | ||
| + | |start_of_center_position=35650618 | ||
| + | |strand=- | ||
| + | |tata_box=19(CCTCTTAGGGGC,+,0.00) | ||
| + | |transcript_name=AK093793 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100599.1 | |tss_id=hg_100599.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:21, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 35650618 |
|---|---|
| End of the center position in the TSS region: | 35650619 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK093793 |
|---|---|
| Distance: | -41 |
| Num_trans: | 13 |
| All_trans: | AK093793:-41 ENST00000486859.5:106 AB527705:-194 ENST00000474403.1:-248 ENST00000259608.8:-269 NM_014450:-269 AK314758:-269 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 |
TATA-Box annotation
| Distance to TSS: | 312 |
|---|---|
| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | SIT1 |
| Gene Alias: | SIT|SIT-R |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 19(CCTCTTAGGGGC,+,0.00) |
