Difference between revisions of "TSS:Hg 101152.1"
From referenceTSS
| Line 4: | Line 4: | ||
|UBQN= | |UBQN= | ||
|XDRP1= | |XDRP1= | ||
| − | |all_trans= | + | |all_trans=AK074535:-97 ENST00000376395.9:136 NM_013438:136 NM_053067:136 AL136643:137 AK027556:142 LF384925:-147 MA620502:-147 BC039294:150 BC017289:150 AK027576:151 ENST00000257468.11:160 BC010066:161 AB035275:306 HM005532:381 AB528730:412 AF176069:415 AF293384:415 LF331823:453 MA567400:453 ENST00000529923.1:493 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=-97 | |distance=-97 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-142 |
|end=83708106 | |end=83708106 | ||
|end_of_center_position=83708100 | |end_of_center_position=83708100 | ||
|entrez_id=29979 | |entrez_id=29979 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=DA41 | + | |gene_alias=DA41{{!}}DSK2{{!}}PLIC-1{{!}}UBQN{{!}}XDRP1 |
|gene_description=ubiquilin 1 | |gene_description=ubiquilin 1 | ||
|gene_id=29979 | |gene_id=29979 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:12508 | |hgnc_mgi_id=HGNC:12508 | ||
|nearest_ensembl=ENSG00000135018 | |nearest_ensembl=ENSG00000135018 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_053067 |
|nearest_refseq=NM_013438 | |nearest_refseq=NM_013438 | ||
|nearest_unigene=Hs.9589 | |nearest_unigene=Hs.9589 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=83708093 | |start=83708093 | ||
|start_of_center_position=83708099 | |start_of_center_position=83708099 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK074535 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101152.1 | |tss_id=hg_101152.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83708099 |
|---|---|
| End of the center position in the TSS region: | 83708100 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK074535 |
|---|---|
| Distance: | -97 |
| Num_trans: | 21 |
| All_trans: | AK074535:-97 ENST00000376395.9:136 NM_013438:136 NM_053067:136 AL136643:137 AK027556:142 LF384925:-147 MA620502:-147 BC039294:150 BC017289:150 AK027576:151 ENST00000257468.11:160 BC010066:161 AB035275:306 HM005532:381 AB528730:412 AF176069:415 AF293384:415 LF331823:453 MA567400:453 ENST00000529923.1:493 |
TATA-Box annotation
| Distance to TSS: | -142 |
|---|---|
| Nearest PromoterID: | NM_053067 |
| Entrez ID: | 29979 |
| Nearest Unigene: | Hs.9589 |
| Nearest Refseq: | NM_013438 |
| Nearest Ensembl: | ENSG00000135018 |
| Gene Name: | ubiquilin 1 |
| Gene Alias: | DA41|DSK2|PLIC-1|UBQN|XDRP1 |
| Gene Description: | ubiquilin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
