Difference between revisions of "TSS:Hg 101225.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC074809:-236 BC074908:-236 BC132682:-279 BC136586:-279 | + | |all_trans=LF331851:0 MA567428:0 BC074809:-236 BC074908:-236 BC132682:-279 BC136586:-279 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=933 |
|end=86946585 | |end=86946585 | ||
| + | |end_of_center_position=86946573 | ||
|entrez_id=2619 | |entrez_id=2619 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| Line 11: | Line 12: | ||
|gene_description=growth arrest specific 1 | |gene_description=growth arrest specific 1 | ||
|gene_id=2619 | |gene_id=2619 | ||
| − | |gene_name= | + | |gene_name=GAS1 |
|gene_source=HGNC:4165 | |gene_source=HGNC:4165 | ||
|gene_symbol=GAS1 | |gene_symbol=GAS1 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_002048 | |nearest_refseq=NM_002048 | ||
|nearest_unigene=Hs.65029 | |nearest_unigene=Hs.65029 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=86946560 | |start=86946560 | ||
| + | |start_of_center_position=86946572 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF331851 MA567428 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101225.1 | |tss_id=hg_101225.1 | ||
Latest revision as of 16:35, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 86946572 |
|---|---|
| End of the center position in the TSS region: | 86946573 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF331851 MA567428 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | LF331851:0 MA567428:0 BC074809:-236 BC074908:-236 BC132682:-279 BC136586:-279 |
TATA-Box annotation
| Distance to TSS: | 933 |
|---|---|
| Nearest PromoterID: | NM_002048 |
| Entrez ID: | 2619 |
| Nearest Unigene: | Hs.65029 |
| Nearest Refseq: | NM_002048 |
| Nearest Ensembl: | ENSG00000180447 |
| Gene Name: | GAS1 |
| Gene Alias: | - |
| Gene Description: | growth arrest specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
