Difference between revisions of "TSS:Hg 101258.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P42= | |P42= | ||
|PNQALRE= | |PNQALRE= | ||
| − | |all_trans=ENST00000459720.5:0 ENST00000486228.7 | + | |all_trans=ENST00000459720.5:0 ENST00000486228.7:0 AF113130:0 BX647489:0 AF035013:0 AK291713:0 ENST00000375883.7:-40 NM_178432:-67 NM_001170640:-67 NM_012119:-67 ENST00000336654.9:83 ENST00000603475.1:138 AK226135:138 ENST00000325303.9:139 NM_001170639:139 NM_001039803:139 AK075325:139 AK294193:139 ENST00000604175.5:141 ENST00000605591.1:141 AK296328:141 AK298993:149 ENST00000605159.5:167 BC002655:167 ENST00000375871.8:185 AY904367:226 KU178572:226 KU178573:226 KU178574:226 KU178575:226 KU178576:226 KU178577:226 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 12: | Line 12: | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=CCRK | + | |gene_alias=CCRK{{!}}CDCH{{!}}P42{{!}}PNQALRE |
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
|gene_id=23552 | |gene_id=23552 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase 20 |
|gene_source=HGNC:21420 | |gene_source=HGNC:21420 | ||
|gene_symbol=CDK20 | |gene_symbol=CDK20 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=87974671 | |start=87974671 | ||
|start_of_center_position=87974692 | |start_of_center_position=87974692 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000459720.5 ENST00000486228.7 | + | |transcript_name=ENST00000459720.5 ENST00000486228.7 AF113130 BX647489 AF035013 AK291713 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101258.1 | |tss_id=hg_101258.1 | ||
Revision as of 16:35, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87974692 |
|---|---|
| End of the center position in the TSS region: | 87974693 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000459720.5 ENST00000486228.7 AF113130 BX647489 AF035013 AK291713 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000459720.5:0 ENST00000486228.7:0 AF113130:0 BX647489:0 AF035013:0 AK291713:0 ENST00000375883.7:-40 NM_178432:-67 NM_001170640:-67 NM_012119:-67 ENST00000336654.9:83 ENST00000603475.1:138 AK226135:138 ENST00000325303.9:139 NM_001170639:139 NM_001039803:139 AK075325:139 AK294193:139 ENST00000604175.5:141 ENST00000605591.1:141 AK296328:141 AK298993:149 ENST00000605159.5:167 BC002655:167 ENST00000375871.8:185 AY904367:226 KU178572:226 KU178573:226 KU178574:226 KU178575:226 KU178576:226 KU178577:226 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_001039803 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin dependent kinase 20 |
| Gene Alias: | CCRK|CDCH|P42|PNQALRE |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
