Difference between revisions of "TSS:Hg 10131.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000377464.5 | + | |all_trans=ENST00000377464.5:-55 AB384483:76 ENST00000464972.5:-143 ENST00000507012.1:-155 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=ZL43 | |gene_alias=ZL43 | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 128 |
|gene_id=473 | |gene_id=473 | ||
| − | |gene_name=arginine-glutamic acid dipeptide | + | |gene_name=arginine-glutamic acid dipeptide repeats |
|gene_source=HGNC:9965 | |gene_source=HGNC:9965 | ||
|gene_symbol=RERE | |gene_symbol=RERE | ||
| − | |gene_synonyms=ARG ARP DNB1 KIAA0458 | + | |gene_synonyms=ARG ARP ATN2 DNB1 KIAA0458 |
|gene_type=snoRNA | |gene_type=snoRNA | ||
|hgnc_mgi_id=HGNC:9965 | |hgnc_mgi_id=HGNC:9965 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_132752 | |nearest_refseq=NR_132752 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=8525860 | |start=8525860 | ||
|start_of_center_position=8525872 | |start_of_center_position=8525872 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=11(GTGTAGAAAAGG,-,0.00) |
| − | |transcript_name=ENST00000377464.5 | + | |transcript_name=ENST00000377464.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10131.1 | |tss_id=hg_10131.1 | ||
Revision as of 16:37, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8525872 |
|---|---|
| End of the center position in the TSS region: | 8525873 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377464.5 |
|---|---|
| Distance: | -55 |
| Num_trans: | 4 |
| All_trans: | ENST00000377464.5:-55 AB384483:76 ENST00000464972.5:-143 ENST00000507012.1:-155 |
TATA-Box annotation
| Distance to TSS: | -30959 |
|---|---|
| Nearest PromoterID: | NR_132752 |
| Entrez ID: | 106632271 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_132752 |
| Nearest Ensembl: | |
| Gene Name: | arginine-glutamic acid dipeptide repeats |
| Gene Alias: | ZL43 |
| Gene Description: | small nucleolar RNA, C/D box 128 |
| Gene Type: | snoRNA |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 11(GTGTAGAAAAGG,-,0.00) |
