Difference between revisions of "TSS:Hg 101358.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000427745 | + | |all_trans=ENST00000427745.1:0 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=109735 | |distance_to_tss=109735 | ||
|end=90965402 | |end=90965402 | ||
| + | |end_of_center_position=90965397 | ||
|entrez_id=100129316 | |entrez_id=100129316 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NR_033912 | |nearest_refseq=NR_033912 | ||
|nearest_unigene=Hs.458154 | |nearest_unigene=Hs.458154 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=90965391 | |start=90965391 | ||
| + | |start_of_center_position=90965396 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-99(TTCCTTAAAAGG,-,0.00),-97(CCTTAAAAGGAA,+,0.00) |
| − | |transcript_name=ENST00000427745 | + | |transcript_name=ENST00000427745.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101358.1 | |tss_id=hg_101358.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:38, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 90965396 |
|---|---|
| End of the center position in the TSS region: | 90965397 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000427745.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | ENST00000427745.1:0 |
TATA-Box annotation
| Distance to TSS: | 109735 |
|---|---|
| Nearest PromoterID: | NR_033912 |
| Entrez ID: | 100129316 |
| Nearest Unigene: | Hs.458154 |
| Nearest Refseq: | NR_033912 |
| Nearest Ensembl: | |
| Gene Name: | LOC100129316 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100129316 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -99(TTCCTTAAAAGG,-,0.00),-97(CCTTAAAAGGAA,+,0.00) |
