Difference between revisions of "TSS:Hg 101458.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-272 |entrez_id=89846 |gc_percent=0.517413 |gene_alias=ZFYVE5 |gene_description="FYVE, RhoGEF and PH domain containing 3" |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-476 | ||
| + | |end=92947053 | ||
| + | |end_of_center_position=92947048 | ||
|entrez_id=89846 | |entrez_id=89846 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=ZFYVE5 | |gene_alias=ZFYVE5 | ||
| − | |gene_description= | + | |gene_description=FYVE, RhoGEF and PH domain containing 3 |
|gene_name=FGD3 | |gene_name=FGD3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_033086 | |nearest_refseq=NM_033086 | ||
|nearest_unigene=Hs.411081 | |nearest_unigene=Hs.411081 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=92947041 | ||
| + | |start_of_center_position=92947047 | ||
| + | |strand=- | ||
| + | |tata_box=-57(GCTTAAAGAGGT,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101458.1 | |tss_id=hg_101458.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:40, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 92947047 |
|---|---|
| End of the center position in the TSS region: | 92947048 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -476 |
|---|---|
| Nearest PromoterID: | NM_001083536 |
| Entrez ID: | 89846 |
| Nearest Unigene: | Hs.411081 |
| Nearest Refseq: | NM_033086 |
| Nearest Ensembl: | ENSG00000127084 |
| Gene Name: | FGD3 |
| Gene Alias: | ZFYVE5 |
| Gene Description: | FYVE, RhoGEF and PH domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -57(GCTTAAAGAGGT,+,0.00) |
