Difference between revisions of "TSS:Hg 101496.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000650398.1:0 ENST00000479094.5:0 ENST00000523407.1:0 ENST00000520403.1:0 BC037551:0 BC063650:0 BC038803:0 BC080634:6 ENST00000423591.5:-24 ENST00000476484.5:-24 BC046183:-26 ENST00000649557.1:-50 NR_136238:-70 NR_136237:-70 NR_136236:-70 NR_136235:-70 NR_136234:-70 NR_136233:-70 NR_136232:-70 NM_001322224:-70 DQ580956:176 ENST00000483056.5:272 ENST00000428152.1:366 ENST00000428378.1:497 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=99 |
|end=93451538 | |end=93451538 | ||
|end_of_center_position=93451509 | |end_of_center_position=93451509 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:23389 | |hgnc_mgi_id=HGNC:23389 | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_136237 |
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=93451479 | |start=93451479 | ||
|start_of_center_position=93451508 | |start_of_center_position=93451508 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000479094.5 ENST00000523407.1 ENST00000520403 | + | |transcript_name=ENST00000650398.1 ENST00000479094.5 ENST00000523407.1 ENST00000520403.1 BC037551 BC063650 BC038803 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101496.1 | |tss_id=hg_101496.1 | ||
Revision as of 16:41, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 93451508 |
|---|---|
| End of the center position in the TSS region: | 93451509 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000650398.1 ENST00000479094.5 ENST00000523407.1 ENST00000520403.1 BC037551 BC063650 BC038803 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000650398.1:0 ENST00000479094.5:0 ENST00000523407.1:0 ENST00000520403.1:0 BC037551:0 BC063650:0 BC038803:0 BC080634:6 ENST00000423591.5:-24 ENST00000476484.5:-24 BC046183:-26 ENST00000649557.1:-50 NR_136238:-70 NR_136237:-70 NR_136236:-70 NR_136235:-70 NR_136234:-70 NR_136233:-70 NR_136232:-70 NM_001322224:-70 DQ580956:176 ENST00000483056.5:272 ENST00000428152.1:366 ENST00000428378.1:497 |
TATA-Box annotation
| Distance to TSS: | 99 |
|---|---|
| Nearest PromoterID: | NR_136237 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | family with sequence similarity 120A opposite strand |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
