Difference between revisions of "TSS:Hg 101512.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=NA | ||
|distance_to_tss=-158 | |distance_to_tss=-158 | ||
| + | |end=94554892 | ||
| + | |end_of_center_position=94554888 | ||
|entrez_id=101928099 | |entrez_id=101928099 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=PCAN-R2 | |gene_alias=PCAN-R2 | ||
| − | |gene_description=prostate cancer associated transcript 7 | + | |gene_description=prostate cancer associated transcript 7 |
|gene_name=PCAT7 | |gene_name=PCAT7 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
|nearest_promoter_id=NR_121569 | |nearest_promoter_id=NR_121569 | ||
|nearest_refseq=NR_121566 | |nearest_refseq=NR_121566 | ||
|nearest_unigene=Hs.674409 | |nearest_unigene=Hs.674409 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=94554882 | ||
| + | |start_of_center_position=94554887 | ||
| + | |strand=- | ||
| + | |tata_box=-36(CAGTATATAAAG,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101512.1 | |tss_id=hg_101512.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94554887 |
|---|---|
| End of the center position in the TSS region: | 94554888 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NR_121569 |
| Entrez ID: | 101928099 |
| Nearest Unigene: | Hs.674409 |
| Nearest Refseq: | NR_121566 |
| Nearest Ensembl: | |
| Gene Name: | PCAT7 |
| Gene Alias: | PCAN-R2 |
| Gene Description: | prostate cancer associated transcript 7 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(CAGTATATAAAG,-,0.00) |
