Difference between revisions of "TSS:Hg 101512.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-158 | |distance_to_tss=-158 | ||
|end=94554892 | |end=94554892 | ||
| Line 9: | Line 9: | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=PCAN-R2 | |gene_alias=PCAN-R2 | ||
| − | |gene_description=prostate cancer associated transcript 7 | + | |gene_description=prostate cancer associated transcript 7 |
|gene_name=PCAT7 | |gene_name=PCAT7 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
|nearest_promoter_id=NR_121569 | |nearest_promoter_id=NR_121569 | ||
|nearest_refseq=NR_121566 | |nearest_refseq=NR_121566 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=94554887 | |start_of_center_position=94554887 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-36(CAGTATATAAAG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94554887 |
|---|---|
| End of the center position in the TSS region: | 94554888 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NR_121569 |
| Entrez ID: | 101928099 |
| Nearest Unigene: | Hs.674409 |
| Nearest Refseq: | NR_121566 |
| Nearest Ensembl: | |
| Gene Name: | PCAT7 |
| Gene Alias: | PCAN-R2 |
| Gene Description: | prostate cancer associated transcript 7 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(CAGTATATAAAG,-,0.00) |
