Difference between revisions of "TSS:Hg 101586.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NAG11= | |NAG11= | ||
|NAG12= | |NAG12= | ||
| − | |all_trans= | + | |all_trans=ENST00000660645.1:0 ENST00000321517.3:0 NR_023390:0 NR_023389:0 AL389954:0 AF194971:0 ENST00000412446.6:-25 LF331872:-32 MA567449:-32 LF209822:-129 MA445399:-129 ENST00000429781.1:365 ENST00000670189.1:365 AK092137:365 ENST00000657579.1:369 ENST00000660143.1:401 ENST00000433656.2:472 AF170307:472 ENST00000671508.1:491 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=100128782 | |entrez_id=100128782 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C9orf130 | + | |gene_alias=C9orf130{{!}}NAG11{{!}}NAG12 |
|gene_description=long intergenic non-protein coding RNA 476 | |gene_description=long intergenic non-protein coding RNA 476 | ||
|gene_id=100128782 | |gene_id=100128782 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:27858 | |hgnc_mgi_id=HGNC:27858 | ||
|nearest_ensembl=ENSG00000175611 | |nearest_ensembl=ENSG00000175611 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_023389 |
|nearest_refseq=NR_023389 | |nearest_refseq=NR_023389 | ||
|nearest_unigene=Hs.494549 | |nearest_unigene=Hs.494549 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=95875951 | |start=95875951 | ||
|start_of_center_position=95875987 | |start_of_center_position=95875987 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000660645.1 ENST00000321517.3 NR_023390 NR_023389 AL389954 AF194971 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101586.1 | |tss_id=hg_101586.1 | ||
Revision as of 16:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95875987 |
|---|---|
| End of the center position in the TSS region: | 95875988 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000660645.1 ENST00000321517.3 NR_023390 NR_023389 AL389954 AF194971 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000660645.1:0 ENST00000321517.3:0 NR_023390:0 NR_023389:0 AL389954:0 AF194971:0 ENST00000412446.6:-25 LF331872:-32 MA567449:-32 LF209822:-129 MA445399:-129 ENST00000429781.1:365 ENST00000670189.1:365 AK092137:365 ENST00000657579.1:369 ENST00000660143.1:401 ENST00000433656.2:472 AF170307:472 ENST00000671508.1:491 |
TATA-Box annotation
| Distance to TSS: | -11 |
|---|---|
| Nearest PromoterID: | NR_023389 |
| Entrez ID: | 100128782 |
| Nearest Unigene: | Hs.494549 |
| Nearest Refseq: | NR_023389 |
| Nearest Ensembl: | ENSG00000175611 |
| Gene Name: | long intergenic non-protein coding RNA 476 |
| Gene Alias: | C9orf130|NAG11|NAG12 |
| Gene Description: | long intergenic non-protein coding RNA 476 |
| Gene Type: | ncRNA |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
