Difference between revisions of "TSS:Hg 101607.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_153698:17 BC136501:17 BC136503:17 ENST00000446045.1:31 | + | |all_trans=ENST00000375234.8:17 NM_153698:17 BC136501:17 BC136503:17 ENST00000446045.1:31 ENST00000464512.1:362 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| Line 9: | Line 9: | ||
|entrez_id=195827 | |entrez_id=195827 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=C9orf21 | + | |gene_alias=AAED1{{!}}C9orf21 |
| − | |gene_description= | + | |gene_description=peroxiredoxin like 2C |
|gene_id=195827 | |gene_id=195827 | ||
| − | |gene_name= | + | |gene_name=peroxiredoxin like 2C |
|gene_source=HGNC:16881 | |gene_source=HGNC:16881 | ||
| − | |gene_symbol= | + | |gene_symbol=PRXL2C |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_153698 | |nearest_refseq=NM_153698 | ||
|nearest_unigene=Hs.44640 | |nearest_unigene=Hs.44640 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=96655333 | |start=96655333 | ||
|start_of_center_position=96655336 | |start_of_center_position=96655336 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_153698 BC136501 BC136503 | + | |transcript_name=ENST00000375234.8 NM_153698 BC136501 BC136503 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101607.1 | |tss_id=hg_101607.1 | ||
Revision as of 16:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96655336 |
|---|---|
| End of the center position in the TSS region: | 96655337 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375234.8 NM_153698 BC136501 BC136503 |
|---|---|
| Distance: | 17 |
| Num_trans: | 6 |
| All_trans: | ENST00000375234.8:17 NM_153698:17 BC136501:17 BC136503:17 ENST00000446045.1:31 ENST00000464512.1:362 |
TATA-Box annotation
| Distance to TSS: | -20 |
|---|---|
| Nearest PromoterID: | NM_153698 |
| Entrez ID: | 195827 |
| Nearest Unigene: | Hs.44640 |
| Nearest Refseq: | NM_153698 |
| Nearest Ensembl: | ENSG00000158122 |
| Gene Name: | peroxiredoxin like 2C |
| Gene Alias: | AAED1|C9orf21 |
| Gene Description: | peroxiredoxin like 2C |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
