Difference between revisions of "TSS:Hg 101624.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|ETMOD= | |ETMOD= | ||
|TMOD= | |TMOD= | ||
| − | |all_trans=ENST00000451595.7 | + | |all_trans=ENST00000451595.7:-226 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-226 | |distance=-226 | ||
| − | |distance_to_tss= | + | |distance_to_tss=14807 |
|end=97516480 | |end=97516480 | ||
| + | |end_of_center_position=97516473 | ||
|entrez_id=7111 | |entrez_id=7111 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=D9S57E | + | |gene_alias=D9S57E{{!}}ETMOD{{!}}TMOD |
|gene_description=tropomodulin 1 | |gene_description=tropomodulin 1 | ||
|gene_name=TMOD1 | |gene_name=TMOD1 | ||
| Line 18: | Line 19: | ||
|nearest_refseq=NM_003275 | |nearest_refseq=NM_003275 | ||
|nearest_unigene=Hs.404289 | |nearest_unigene=Hs.404289 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=97516465 | |start=97516465 | ||
| + | |start_of_center_position=97516472 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) |
| − | |transcript_name=ENST00000451595.7 | + | |transcript_name=ENST00000451595.7 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101624.1 | |tss_id=hg_101624.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:44, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 97516472 |
|---|---|
| End of the center position in the TSS region: | 97516473 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000451595.7 |
|---|---|
| Distance: | -226 |
| Num_trans: | 1 |
| All_trans: | ENST00000451595.7:-226 |
TATA-Box annotation
| Distance to TSS: | 14807 |
|---|---|
| Nearest PromoterID: | NM_003275 |
| Entrez ID: | 7111 |
| Nearest Unigene: | Hs.404289 |
| Nearest Refseq: | NM_003275 |
| Nearest Ensembl: | ENSG00000136842 |
| Gene Name: | TMOD1 |
| Gene Alias: | D9S57E|ETMOD|TMOD |
| Gene Description: | tropomodulin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) |
