Difference between revisions of "TSS:Hg 101628.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NCBP= | |NCBP= | ||
|Sto1= | |Sto1= | ||
| − | |all_trans=AK128615:0 BX538308:24 BX648493:26 BC035604:27 ENST00000375172.6 | + | |all_trans=ENST00000341170.5:0 NM_139246:0 AK128615:0 BX538308:24 BX648493:26 BC035604:27 ENST00000375172.6:43 AK094043:43 AK291199:43 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-4 |
|end=97633400 | |end=97633400 | ||
|end_of_center_position=97633372 | |end_of_center_position=97633372 | ||
| − | |entrez_id= | + | |entrez_id=158427 |
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias= | + | |gene_alias=C9orf97 |
| − | |gene_description= | + | |gene_description=thiosulfate sulfurtransferase like domain containing 2 |
|gene_id=158427 | |gene_id=158427 | ||
| − | |gene_name=thiosulfate sulfurtransferase | + | |gene_name=thiosulfate sulfurtransferase like domain containing 2 |
|gene_source=HGNC:30087 | |gene_source=HGNC:30087 | ||
|gene_symbol=TSTD2 | |gene_symbol=TSTD2 | ||
| Line 20: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:30087 | |hgnc_mgi_id=HGNC:30087 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000136925 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_139246 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_139246 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.723236 |
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=97633343 | |start=97633343 | ||
|start_of_center_position=97633371 | |start_of_center_position=97633371 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=15(GCTTTTCTACCC,+,0.00) |
| − | |transcript_name=AK128615 | + | |transcript_name=ENST00000341170.5 NM_139246 AK128615 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101628.1 | |tss_id=hg_101628.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5T7W7 |
}} | }} | ||
Revision as of 16:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97633371 |
|---|---|
| End of the center position in the TSS region: | 97633372 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341170.5 NM_139246 AK128615 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000341170.5:0 NM_139246:0 AK128615:0 BX538308:24 BX648493:26 BC035604:27 ENST00000375172.6:43 AK094043:43 AK291199:43 |
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_139246 |
| Entrez ID: | 158427 |
| Nearest Unigene: | Hs.723236 |
| Nearest Refseq: | NM_139246 |
| Nearest Ensembl: | ENSG00000136925 |
| Gene Name: | thiosulfate sulfurtransferase like domain containing 2 |
| Gene Alias: | C9orf97 |
| Gene Description: | thiosulfate sulfurtransferase like domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 15(GCTTTTCTACCC,+,0.00) |
