Difference between revisions of "TSS:Hg 101630.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|XPAC= | |XPAC= | ||
| − | |all_trans=D14533:0 ENST00000496104 | + | |all_trans=ENST00000375128.5:0 NM_000380:0 D14533:0 ENST00000496104.1:3 ENST00000462523.5:5 KJ892389:6 BT019518:6 DQ893624:6 DQ895423:6 AB590398:6 KC899693:6 BC014965:-8 NM_001354975:-60 NR_027302:-60 NR_149094:-60 NR_149093:-60 NR_149092:-60 NR_149091:-60 LF383868:-60 MA619445:-60 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 10: | Line 10: | ||
|entrez_id=7507 | |entrez_id=7507 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=XP1 | + | |gene_alias=XP1{{!}}XPAC |
| − | |gene_description= | + | |gene_description=XPA, DNA damage recognition and repair factor |
|gene_id=7507 | |gene_id=7507 | ||
| − | |gene_name= | + | |gene_name=XPA, DNA damage recognition and repair factor |
|gene_source=HGNC:12814 | |gene_source=HGNC:12814 | ||
|gene_symbol=XPA | |gene_symbol=XPA | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_000380 | |nearest_refseq=NM_000380 | ||
|nearest_unigene=Hs.654364 | |nearest_unigene=Hs.654364 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=97697297 | |start=97697297 | ||
|start_of_center_position=97697323 | |start_of_center_position=97697323 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=D14533 | + | |transcript_name=ENST00000375128.5 NM_000380 D14533 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101630.1 | |tss_id=hg_101630.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P23025 |
}} | }} | ||
Revision as of 16:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97697323 |
|---|---|
| End of the center position in the TSS region: | 97697324 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375128.5 NM_000380 D14533 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000375128.5:0 NM_000380:0 D14533:0 ENST00000496104.1:3 ENST00000462523.5:5 KJ892389:6 BT019518:6 DQ893624:6 DQ895423:6 AB590398:6 KC899693:6 BC014965:-8 NM_001354975:-60 NR_027302:-60 NR_149094:-60 NR_149093:-60 NR_149092:-60 NR_149091:-60 LF383868:-60 MA619445:-60 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NR_027302 |
| Entrez ID: | 7507 |
| Nearest Unigene: | Hs.654364 |
| Nearest Refseq: | NM_000380 |
| Nearest Ensembl: | ENSG00000136936 |
| Gene Name: | XPA, DNA damage recognition and repair factor |
| Gene Alias: | XP1|XPAC |
| Gene Description: | XPA, DNA damage recognition and repair factor |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
