Difference between revisions of "TSS:Hg 101637.1"
From referenceTSS
| Line 7: | Line 7: | ||
|TTF-2= | |TTF-2= | ||
|TTF2= | |TTF2= | ||
| + | |all_trans=ENST00000649461.1:27 ENST00000649526.1:27 ENST00000650104.1:27 NR_147055:27 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=27 |
| − | |distance_to_tss=- | + | |distance_to_tss=-33 |
|end=97853120 | |end=97853120 | ||
|end_of_center_position=97853114 | |end_of_center_position=97853114 | ||
| − | |entrez_id= | + | |entrez_id=101928337 |
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=papillary thyroid carcinoma susceptibility candidate 2 |
| − | |gene_name= | + | |gene_id=101928337 |
| − | |gene_type= | + | |gene_name=papillary thyroid carcinoma susceptibility candidate 2 |
| − | |nearest_ensembl= | + | |gene_source=HGNC:44086 |
| − | |nearest_promoter_id= | + | |gene_symbol=PTCSC2 |
| − | |nearest_refseq= | + | |gene_synonyms= |
| − | |nearest_unigene= | + | |gene_type=ncRNA |
| − | |num_trans= | + | |hgnc_mgi_id=HGNC:44086 |
| + | |nearest_ensembl=ENSG00000236130 | ||
| + | |nearest_promoter_id=NR_147055 | ||
| + | |nearest_refseq=NR_147055 | ||
| + | |nearest_unigene= | ||
| + | |num_trans=4 | ||
|species=human | |species=human | ||
|start=97853106 | |start=97853106 | ||
|start_of_center_position=97853113 | |start_of_center_position=97853113 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-93(CTCCTTAAAGGG,-,0.00),-91(CCTTAAAGGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000649461.1 ENST00000649526.1 ENST00000650104.1 NR_147055 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101637.1 | |tss_id=hg_101637.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97853113 |
|---|---|
| End of the center position in the TSS region: | 97853114 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000649461.1 ENST00000649526.1 ENST00000650104.1 NR_147055 |
|---|---|
| Distance: | 27 |
| Num_trans: | 4 |
| All_trans: | ENST00000649461.1:27 ENST00000649526.1:27 ENST00000650104.1:27 NR_147055:27 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NR_147055 |
| Entrez ID: | 101928337 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_147055 |
| Nearest Ensembl: | ENSG00000236130 |
| Gene Name: | papillary thyroid carcinoma susceptibility candidate 2 |
| Gene Alias: | - |
| Gene Description: | papillary thyroid carcinoma susceptibility candidate 2 |
| Gene Type: | ncRNA |
| CpG%: | 0.105 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTCCTTAAAGGG,-,0.00),-91(CCTTAAAGGGGC,+,0.00) |
