Difference between revisions of "TSS:Hg 101644.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HSPC219= | |HSPC219= | ||
|NAP1= | |NAP1= | ||
| − | |all_trans=ENST00000611338.4:0 | + | |all_trans=ENST00000375119.8:0 ENST00000611338.4:0 NM_001371657:0 NM_001371658:0 NM_016481:0 NM_001330725:0 NM_001371661:0 NM_001371660:0 AY189280:0 KJ898914:0 DQ892983:0 DQ896231:0 CU678254:0 AF151053:0 AK309270:0 ENST00000375117.8:1 ENST00000455506.1:4 LF206453:-4 MA442030:-4 BC002863:-16 ENST00000478126.5:19 ENST00000471580.1:23 AK000213:-36 AK302701:-36 ENST00000660312.1:310 NM_001371659:310 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=51531 | |entrez_id=51531 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=C9orf156 | + | |gene_alias=C9orf156{{!}}HSPC219{{!}}NAP1 |
|gene_description=tRNA methyltransferase O | |gene_description=tRNA methyltransferase O | ||
|gene_id=51531 | |gene_id=51531 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:30967 | |hgnc_mgi_id=HGNC:30967 | ||
|nearest_ensembl=ENSG00000136932 | |nearest_ensembl=ENSG00000136932 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016481 |
|nearest_refseq=NM_016481 | |nearest_refseq=NM_016481 | ||
|nearest_unigene=Hs.9196 | |nearest_unigene=Hs.9196 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=97922490 | |start=97922490 | ||
|start_of_center_position=97922512 | |start_of_center_position=97922512 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000611338.4 | + | |transcript_name=ENST00000375119.8 ENST00000611338.4 NM_001371657 NM_001371658 NM_016481 NM_001330725 NM_001371661 NM_001371660 AY189280 KJ898914 DQ892983 DQ896231 CU678254 AF151053 AK309270 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101644.1 | |tss_id=hg_101644.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q6Y2L2 | + | |uniprot_id=Q6Y2L2 Q9BU70 |
}} | }} | ||
Revision as of 16:45, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97922512 |
|---|---|
| End of the center position in the TSS region: | 97922513 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375119.8 ENST00000611338.4 NM_001371657 NM_001371658 NM_016481 NM_001330725 NM_001371661 NM_001371660 AY189280 KJ898914 DQ892983 DQ896231 CU678254 AF151053 AK309270 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000375119.8:0 ENST00000611338.4:0 NM_001371657:0 NM_001371658:0 NM_016481:0 NM_001330725:0 NM_001371661:0 NM_001371660:0 AY189280:0 KJ898914:0 DQ892983:0 DQ896231:0 CU678254:0 AF151053:0 AK309270:0 ENST00000375117.8:1 ENST00000455506.1:4 LF206453:-4 MA442030:-4 BC002863:-16 ENST00000478126.5:19 ENST00000471580.1:23 AK000213:-36 AK302701:-36 ENST00000660312.1:310 NM_001371659:310 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_016481 |
| Entrez ID: | 51531 |
| Nearest Unigene: | Hs.9196 |
| Nearest Refseq: | NM_016481 |
| Nearest Ensembl: | ENSG00000136932 |
| Gene Name: | tRNA methyltransferase O |
| Gene Alias: | C9orf156|HSPC219|NAP1 |
| Gene Description: | tRNA methyltransferase O |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
