Difference between revisions of "TSS:Hg 101775.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=135525 |entrez_id=414319 |gc_percent=0.517413 |gene_alias=C9orf107|bA785H23.1 |gene_description=long intergenic non-protein cod...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |bA785H23.1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=NA | ||
|distance_to_tss=135525 | |distance_to_tss=135525 | ||
| + | |end=102655166 | ||
| + | |end_of_center_position=102655162 | ||
|entrez_id=414319 | |entrez_id=414319 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=C9orf107 | + | |gene_alias=C9orf107{{!}}bA785H23.1 |
|gene_description=long intergenic non-protein coding RNA 587 | |gene_description=long intergenic non-protein coding RNA 587 | ||
|gene_name=LINC00587 | |gene_name=LINC00587 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NR_103830 | |nearest_refseq=NR_103830 | ||
|nearest_unigene=Hs.385790 | |nearest_unigene=Hs.385790 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=102655157 | ||
| + | |start_of_center_position=102655161 | ||
| + | |strand=- | ||
| + | |tata_box=-35(GGTTTTATAAGG,-,0.00),17(CGCCATATAGGA,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_101775.1 | |tss_id=hg_101775.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102655161 |
|---|---|
| End of the center position in the TSS region: | 102655162 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 135525 |
|---|---|
| Nearest PromoterID: | NR_103830 |
| Entrez ID: | 414319 |
| Nearest Unigene: | Hs.385790 |
| Nearest Refseq: | NR_103830 |
| Nearest Ensembl: | ENSG00000204250 |
| Gene Name: | LINC00587 |
| Gene Alias: | C9orf107|bA785H23.1 |
| Gene Description: | long intergenic non-protein coding RNA 587 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGTTTTATAAGG,-,0.00),17(CGCCATATAGGA,-,0.00) |
