Difference between revisions of "TSS:Hg 101806.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
| + | |all_trans=LF354701:-160 MA590278:-160 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-160 |
| − | |distance_to_tss= | + | |distance_to_tss=1703 |
|end=104926463 | |end=104926463 | ||
| + | |end_of_center_position=104926452 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_name=ABCA1 | |gene_name=ABCA1 | ||
| Line 19: | Line 21: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=104926440 | |start=104926440 | ||
| + | |start_of_center_position=104926451 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF354701 MA590278 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101806.1 | |tss_id=hg_101806.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 104926451 |
|---|---|
| End of the center position in the TSS region: | 104926452 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF354701 MA590278 |
|---|---|
| Distance: | -160 |
| Num_trans: | 2 |
| All_trans: | LF354701:-160 MA590278:-160 |
TATA-Box annotation
| Distance to TSS: | 1703 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
