Difference between revisions of "TSS:Hg 101894.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PTPH1= | |PTPH1= | ||
| + | |all_trans=LF206473:148 MA442050:148 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=148 |
|distance_to_tss=-2844 | |distance_to_tss=-2844 | ||
|end=109420633 | |end=109420633 | ||
| + | |end_of_center_position=109420628 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=PTP-H1 | + | |gene_alias=PTP-H1{{!}}PTPH1 |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase non-receptor type 3 |
|gene_name=PTPN3 | |gene_name=PTPN3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 16: | Line 18: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=109420621 | |start=109420621 | ||
| + | |start_of_center_position=109420627 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF206473 MA442050 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101894.1 | |tss_id=hg_101894.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:50, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 109420627 |
|---|---|
| End of the center position in the TSS region: | 109420628 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF206473 MA442050 |
|---|---|
| Distance: | 148 |
| Num_trans: | 2 |
| All_trans: | LF206473:148 MA442050:148 |
TATA-Box annotation
| Distance to TSS: | -2844 |
|---|---|
| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
