Difference between revisions of "TSS:Hg 101896.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-3696 |entrez_id=5774 |gc_percent=0.527363 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-recept...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=NA | ||
|distance_to_tss=-3696 | |distance_to_tss=-3696 | ||
| + | |end=109421490 | ||
| + | |end_of_center_position=109421480 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=PTP-H1 | + | |gene_alias=PTP-H1{{!}}PTPH1 |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase non-receptor type 3 |
|gene_name=PTPN3 | |gene_name=PTPN3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=109421468 | ||
| + | |start_of_center_position=109421479 | ||
| + | |strand=- | ||
| + | |tata_box=-38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_101896.1 | |tss_id=hg_101896.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:50, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109421479 |
|---|---|
| End of the center position in the TSS region: | 109421480 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -3696 |
|---|---|
| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00) |
