Difference between revisions of "TSS:Hg 101909.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=MG828775:-164 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-164 |
|distance_to_tss=-26873 | |distance_to_tss=-26873 | ||
|end=109538425 | |end=109538425 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=microRNA 3927 | |gene_description=microRNA 3927 | ||
| − | |gene_name= | + | |gene_id=5774 |
| + | |gene_name=protein tyrosine phosphatase non-receptor type 3 | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000263861 | |nearest_ensembl=ENSG00000263861 | ||
|nearest_promoter_id=NR_037493 | |nearest_promoter_id=NR_037493 | ||
|nearest_refseq=NR_037493 | |nearest_refseq=NR_037493 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=109538410 | |start=109538410 | ||
|start_of_center_position=109538417 | |start_of_center_position=109538417 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=MG828775 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101909.1 | |tss_id=hg_101909.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109538417 |
|---|---|
| End of the center position in the TSS region: | 109538418 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | MG828775 |
|---|---|
| Distance: | -164 |
| Num_trans: | 1 |
| All_trans: | MG828775:-164 |
TATA-Box annotation
| Distance to TSS: | -26873 |
|---|---|
| Nearest PromoterID: | NR_037493 |
| Entrez ID: | 100500898 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_037493 |
| Nearest Ensembl: | ENSG00000263861 |
| Gene Name: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Alias: | - |
| Gene Description: | microRNA 3927 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.358209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
