Difference between revisions of "TSS:Hg 102020.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=6446 |entrez_id=22949 |gc_percent=0.343284 |gene_alias=LTB4DH|PGR1|ZADH3 |gene_description=prostaglandin reductase 1 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PGR1= | ||
| + | |ZADH3= | ||
| + | |all_trans=LF354980:9 MA590557:9 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=9 | ||
|distance_to_tss=6446 | |distance_to_tss=6446 | ||
| + | |end=111592985 | ||
| + | |end_of_center_position=111592985 | ||
|entrez_id=22949 | |entrez_id=22949 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
| − | |gene_alias=LTB4DH | + | |gene_alias=LTB4DH{{!}}PGR1{{!}}ZADH3 |
|gene_description=prostaglandin reductase 1 | |gene_description=prostaglandin reductase 1 | ||
|gene_name=PTGR1 | |gene_name=PTGR1 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_012212 | |nearest_refseq=NM_012212 | ||
|nearest_unigene=Hs.584864 | |nearest_unigene=Hs.584864 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=111592984 | ||
| + | |start_of_center_position=111592984 | ||
| + | |strand=- | ||
| + | |transcript_name=LF354980 MA590557 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102020.1 | |tss_id=hg_102020.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:53, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 111592984 |
|---|---|
| End of the center position in the TSS region: | 111592985 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF354980 MA590557 |
|---|---|
| Distance: | 9 |
| Num_trans: | 2 |
| All_trans: | LF354980:9 MA590557:9 |
TATA-Box annotation
| Distance to TSS: | 6446 |
|---|---|
| Nearest PromoterID: | NM_012212 |
| Entrez ID: | 22949 |
| Nearest Unigene: | Hs.584864 |
| Nearest Refseq: | NM_012212 |
| Nearest Ensembl: | ENSG00000106853 |
| Gene Name: | PTGR1 |
| Gene Alias: | LTB4DH|PGR1|ZADH3 |
| Gene Description: | prostaglandin reductase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
