Difference between revisions of "TSS:Hg 102047.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=100548 |entrez_id=64420 |gc_percent=0.333333 |gene_alias=- |gene_description=sushi domain containing 1 |gene_name=SUSD1 |gene_ty...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=NA | ||
|distance_to_tss=100548 | |distance_to_tss=100548 | ||
| + | |end=112074752 | ||
| + | |end_of_center_position=112074750 | ||
|entrez_id=64420 | |entrez_id=64420 | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
| Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000106868 | |nearest_ensembl=ENSG00000106868 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282640 |
|nearest_refseq=NM_022486 | |nearest_refseq=NM_022486 | ||
|nearest_unigene=Hs.494827 | |nearest_unigene=Hs.494827 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=112074746 | ||
| + | |start_of_center_position=112074749 | ||
| + | |strand=- | ||
| + | |tata_box=-33(TTTTATAAAAGG,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102047.1 | |tss_id=hg_102047.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112074749 |
|---|---|
| End of the center position in the TSS region: | 112074750 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 100548 |
|---|---|
| Nearest PromoterID: | NM_001282640 |
| Entrez ID: | 64420 |
| Nearest Unigene: | Hs.494827 |
| Nearest Refseq: | NM_022486 |
| Nearest Ensembl: | ENSG00000106868 |
| Gene Name: | SUSD1 |
| Gene Alias: | - |
| Gene Description: | sushi domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TTTTATAAAAGG,-,0.00) |
