Difference between revisions of "TSS:Hg 102078.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TSCOT= | |TSCOT= | ||
| − | |all_trans= | + | |all_trans=ENST00000374228.5:0 NM_033051:0 AK055571:0 AF242557:-30 AK314414:51 ENST00000491462.2:59 BC048285:104 HQ448607:187 KJ899379:187 CU690566:187 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=112890883 | |end=112890883 | ||
|end_of_center_position=112890876 | |end_of_center_position=112890876 | ||
|entrez_id=57864 | |entrez_id=57864 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=Ly110 | + | |gene_alias=Ly110{{!}}TSCOT |
|gene_description=solute carrier family 46 member 2 | |gene_description=solute carrier family 46 member 2 | ||
|gene_id=57864 | |gene_id=57864 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_033051 | |nearest_refseq=NM_033051 | ||
|nearest_unigene=Hs.512668 | |nearest_unigene=Hs.512668 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=112890868 | |start=112890868 | ||
|start_of_center_position=112890875 | |start_of_center_position=112890875 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-62(CCTTTTCTGGCC,+,0.00) |
| − | |transcript_name=AK055571 | + | |transcript_name=ENST00000374228.5 NM_033051 AK055571 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102078.1 | |tss_id=hg_102078.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024QYV1 Q9BY10 |
}} | }} | ||
Revision as of 16:55, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112890875 |
|---|---|
| End of the center position in the TSS region: | 112890876 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374228.5 NM_033051 AK055571 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000374228.5:0 NM_033051:0 AK055571:0 AF242557:-30 AK314414:51 ENST00000491462.2:59 BC048285:104 HQ448607:187 KJ899379:187 CU690566:187 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_033051 |
| Entrez ID: | 57864 |
| Nearest Unigene: | Hs.512668 |
| Nearest Refseq: | NM_033051 |
| Nearest Ensembl: | ENSG00000119457 |
| Gene Name: | solute carrier family 46 member 2 |
| Gene Alias: | Ly110|TSCOT |
| Gene Description: | solute carrier family 46 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(CCTTTTCTGGCC,+,0.00) |
