Difference between revisions of "TSS:Hg 102166.1"
From referenceTSS
| Line 4: | Line 4: | ||
|USH2D= | |USH2D= | ||
|WI= | |WI= | ||
| − | |all_trans=ENST00000374057.3 | + | |all_trans=ENST00000374057.3:0 BC142614:0 AK056190:0 BC142684:7 BC014524:13 ENST00000362057.4:-15 ENST00000673697.1:-15 NM_001173425:-15 NM_015404:-15 BC136416:233 AB040959:468 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=25 |
|end=114505458 | |end=114505458 | ||
|end_of_center_position=114505448 | |end_of_center_position=114505448 | ||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=CIP98 | + | |gene_alias=CIP98{{!}}DFNB31{{!}}PDZD7B{{!}}USH2D{{!}}WI |
|gene_description=whirlin | |gene_description=whirlin | ||
|gene_id=25861 | |gene_id=25861 | ||
| − | |gene_name= | + | |gene_name=whirlin |
|gene_source=HGNC:16361 | |gene_source=HGNC:16361 | ||
| − | |gene_symbol= | + | |gene_symbol=WHRN |
| − | |gene_synonyms=CIP98 PDZD7B USH2D | + | |gene_synonyms=CIP98 PDZD7B USH2D |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16361 | |hgnc_mgi_id=HGNC:16361 | ||
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015404 |
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=114505437 | |start=114505437 | ||
|start_of_center_position=114505447 | |start_of_center_position=114505447 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374057.3 | + | |transcript_name=ENST00000374057.3 BC142614 AK056190 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102166.1 | |tss_id=hg_102166.1 | ||
Revision as of 16:57, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114505447 |
|---|---|
| End of the center position in the TSS region: | 114505448 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374057.3 BC142614 AK056190 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000374057.3:0 BC142614:0 AK056190:0 BC142684:7 BC014524:13 ENST00000362057.4:-15 ENST00000673697.1:-15 NM_001173425:-15 NM_015404:-15 BC136416:233 AB040959:468 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_015404 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | whirlin |
| Gene Alias: | CIP98|DFNB31|PDZD7B|USH2D|WI |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
