Difference between revisions of "TSS:Hg 10220.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_104622:59 NR_104623:139 | + | |all_trans=ENST00000641325.1:-10 NR_104622:59 ENST00000641507.1:139 NR_104623:139 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=-10 |
|distance_to_tss=-64 | |distance_to_tss=-64 | ||
|end=9429065 | |end=9429065 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2606 |
|gene_id=100506022 | |gene_id=100506022 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2606 |
| − | |gene_source= | + | |gene_source=HGNC:54047 |
| − | |gene_symbol= | + | |gene_symbol=LINC02606 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:54047 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284693 |
|nearest_promoter_id=NR_104622 | |nearest_promoter_id=NR_104622 | ||
|nearest_refseq=NR_104622 | |nearest_refseq=NR_104622 | ||
|nearest_unigene=Hs.131775 | |nearest_unigene=Hs.131775 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=9429054 | |start=9429054 | ||
|start_of_center_position=9429059 | |start_of_center_position=9429059 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000641325.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10220.1 | |tss_id=hg_10220.1 | ||
Revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9429059 |
|---|---|
| End of the center position in the TSS region: | 9429060 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000641325.1 |
|---|---|
| Distance: | -10 |
| Num_trans: | 4 |
| All_trans: | ENST00000641325.1:-10 NR_104622:59 ENST00000641507.1:139 NR_104623:139 |
TATA-Box annotation
| Distance to TSS: | -64 |
|---|---|
| Nearest PromoterID: | NR_104622 |
| Entrez ID: | 100506022 |
| Nearest Unigene: | Hs.131775 |
| Nearest Refseq: | NR_104622 |
| Nearest Ensembl: | ENSG00000284693 |
| Gene Name: | long intergenic non-protein coding RNA 2606 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2606 |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
