Difference between revisions of "TSS:Hg 102219.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 7: | Line 7: | ||
|TN= | |TN= | ||
|TN-C= | |TN-C= | ||
| + | |all_trans=LF355100:36 MA590677:36 LF355101:-63 MA590678:-63 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=36 |
| − | |distance_to_tss= | + | |distance_to_tss=33755 |
|end=115084407 | |end=115084407 | ||
| + | |end_of_center_position=115084402 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=150-225 | + | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C |
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_name=TNC | |gene_name=TNC | ||
| Line 22: | Line 24: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=115084396 | |start=115084396 | ||
| + | |start_of_center_position=115084401 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF355100 MA590677 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102219.1 | |tss_id=hg_102219.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115084401 |
|---|---|
| End of the center position in the TSS region: | 115084402 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355100 MA590677 |
|---|---|
| Distance: | 36 |
| Num_trans: | 4 |
| All_trans: | LF355100:36 MA590677:36 LF355101:-63 MA590678:-63 |
TATA-Box annotation
| Distance to TSS: | 33755 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | TNC |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
