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Difference between revisions of "TSS:Hg 102220.1"

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Line 7: Line 7:
 
|TN=
 
|TN=
 
|TN-C=
 
|TN-C=
|all_trans=ENST00000537320.5:-8 uc064vgr.1:-8 M55618:-12 ENST00000341037.8:-14 uc064vgq.1:-14 X56160:56 KJ904485:99 AB384681:101 ENST00000542877.5:103 uc064vgs.1:103 GU473235:103 X80280:238
+
|all_trans=ENST00000537320.5:-8 M55618:-12 ENST00000341037.8:-14 LF355115:18 MA590692:18 LF213716:-22 MA449293:-22 X56160:56 KJ904485:99 AB384681:101 ENST00000542877.5:103 GU473235:103 LF355114:157 MA590691:157 X80280:238 LF355113:341 MA590690:341 LF355112:469 MA590689:469
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0
 
|cpg_percent=0
 
|distance=-8
 
|distance=-8
|distance_to_tss=27130
+
|distance_to_tss=27030
 
|end=115091133
 
|end=115091133
 
|end_of_center_position=115091127
 
|end_of_center_position=115091127
 
|entrez_id=3371
 
|entrez_id=3371
 
|gc_percent=0.383085
 
|gc_percent=0.383085
|gene_alias=150-225
+
|gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C
 
|gene_description=tenascin C
 
|gene_description=tenascin C
 
|gene_id=3371
 
|gene_id=3371
Line 29: Line 29:
 
|nearest_refseq=NM_002160
 
|nearest_refseq=NM_002160
 
|nearest_unigene=Hs.143250
 
|nearest_unigene=Hs.143250
|num_trans=12
+
|num_trans=19
 
|species=human
 
|species=human
 
|start=115091120
 
|start=115091120
 
|start_of_center_position=115091126
 
|start_of_center_position=115091126
 
|strand=-
 
|strand=-
|transcript_name=ENST00000537320.5 uc064vgr.1
+
|transcript_name=ENST00000537320.5
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_102220.1
 
|tss_id=hg_102220.1

Revision as of 16:58, 15 June 2021

Basic information about the TSS


TSS ID:hg_102220.1
Species:human
Chr:chr9
TSS Classification:no
Start:115091120
End:115091133
Strand:-
TSS Score:1
Start of the center position in the TSS region:115091126
End of the center position in the TSS region:115091127



Gene and protein annotation


Transcript_name:ENST00000537320.5
Distance:-8
GeneID:3371
HGNC/MGI_ID:HGNC:5318
UniProt_ID:P24821
Gene_name:tenascin C
Gene_symbol:TNC
Gene_synonyms:MGC167029 TN
Gene_source:HGNC:5318



Transcript annotation


Transcript_name:ENST00000537320.5
Distance:-8
Num_trans:19
All_trans:ENST00000537320.5:-8 M55618:-12 ENST00000341037.8:-14 LF355115:18 MA590692:18 LF213716:-22 MA449293:-22 X56160:56 KJ904485:99 AB384681:101 ENST00000542877.5:103 GU473235:103 LF355114:157 MA590691:157 X80280:238 LF355113:341 MA590690:341 LF355112:469 MA590689:469



TATA-Box annotation


Distance to TSS:27030
Nearest PromoterID:NM_002160
Entrez ID:3371
Nearest Unigene:Hs.143250
Nearest Refseq:NM_002160
Nearest Ensembl:ENSG00000041982
Gene Name:tenascin C
Gene Alias:150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C
Gene Description:tenascin C
Gene Type:protein-coding
CpG%:0
GC%:0.383085
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):