Difference between revisions of "TSS:Hg 102228.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-807 |entrez_id=3371 |gc_percent=0.517413 |gene_alias=150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |gene_description=tenascin C |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFNA56= | ||
| + | |GMEM= | ||
| + | |GP= | ||
| + | |HXB= | ||
| + | |JI= | ||
| + | |TN= | ||
| + | |TN-C= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-907 | ||
| + | |end=115119069 | ||
| + | |end_of_center_position=115119064 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=150-225 | + | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C |
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_name=TNC | |gene_name=TNC | ||
| Line 12: | Line 23: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=115119058 | ||
| + | |start_of_center_position=115119063 | ||
| + | |strand=- | ||
| + | |tata_box=-35(TCCCTTAAATGC,-,0.00),-33(CCTTAAATGCCC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102228.1 | |tss_id=hg_102228.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115119063 |
|---|---|
| End of the center position in the TSS region: | 115119064 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -907 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | TNC |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(TCCCTTAAATGC,-,0.00),-33(CCTTAAATGCCC,+,0.00) |
