Difference between revisions of "TSS:Hg 102241.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|EST-YD1= | |EST-YD1= | ||
| − | |all_trans=ENST00000374014.3:375 | + | |all_trans=ENST00000374014.3:375 NR_024032:375 AB021923:375 BC029369:453 BC104240:484 BC112996:484 BC112997:484 BC128039:484 BC104241:485 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=375 | |distance=375 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-382 |
|end=115925596 | |end=115925596 | ||
|end_of_center_position=115925589 | |end_of_center_position=115925589 | ||
|entrez_id=58483 | |entrez_id=58483 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=C9orf27 | + | |gene_alias=C9orf27{{!}}EST-YD1 |
|gene_description=long intergenic non-protein coding RNA 474 | |gene_description=long intergenic non-protein coding RNA 474 | ||
|gene_id=58483 | |gene_id=58483 | ||
| Line 19: | Line 19: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:23367 | |hgnc_mgi_id=HGNC:23367 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000204148 |
|nearest_promoter_id=NR_024032 | |nearest_promoter_id=NR_024032 | ||
| − | |nearest_refseq= | + | |nearest_refseq=NR_024032 |
|nearest_unigene=Hs.23367 | |nearest_unigene=Hs.23367 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=115925581 | |start=115925581 | ||
|start_of_center_position=115925588 | |start_of_center_position=115925588 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374014.3 | + | |transcript_name=ENST00000374014.3 NR_024032 AB021923 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102241.1 | |tss_id=hg_102241.1 | ||
Revision as of 16:59, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115925588 |
|---|---|
| End of the center position in the TSS region: | 115925589 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374014.3 NR_024032 AB021923 |
|---|---|
| Distance: | 375 |
| Num_trans: | 9 |
| All_trans: | ENST00000374014.3:375 NR_024032:375 AB021923:375 BC029369:453 BC104240:484 BC112996:484 BC112997:484 BC128039:484 BC104241:485 |
TATA-Box annotation
| Distance to TSS: | -382 |
|---|---|
| Nearest PromoterID: | NR_024032 |
| Entrez ID: | 58483 |
| Nearest Unigene: | Hs.23367 |
| Nearest Refseq: | NR_024032 |
| Nearest Ensembl: | ENSG00000204148 |
| Gene Name: | long intergenic non-protein coding RNA 474 |
| Gene Alias: | C9orf27|EST-YD1 |
| Gene Description: | long intergenic non-protein coding RNA 474 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
