Difference between revisions of "TSS:Hg 102309.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PCL3= | |PCL3= | ||
|TDRD19B= | |TDRD19B= | ||
| − | |all_trans=ENST00000312189.10:-57 | + | |all_trans=ENST00000373896.8:-57 ENST00000312189.10:-57 NM_015651:-57 NM_001286843:-57 NM_001009936:-57 AK122744:-57 BC022374:-57 AK303433:-87 ENST00000436309.5:97 BC108663:-158 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=-57 | |distance=-57 | ||
| − | |distance_to_tss= | + | |distance_to_tss=61 |
|end=120877131 | |end=120877131 | ||
|end_of_center_position=120877127 | |end_of_center_position=120877127 | ||
|entrez_id=26147 | |entrez_id=26147 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=MTF2L1 | + | |gene_alias=MTF2L1{{!}}PCL3{{!}}TDRD19B |
|gene_description=PHD finger protein 19 | |gene_description=PHD finger protein 19 | ||
|gene_id=26147 | |gene_id=26147 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:24566 | |hgnc_mgi_id=HGNC:24566 | ||
|nearest_ensembl=ENSG00000119403 | |nearest_ensembl=ENSG00000119403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286843 |
|nearest_refseq=NM_015651 | |nearest_refseq=NM_015651 | ||
|nearest_unigene=Hs.460124 | |nearest_unigene=Hs.460124 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=120877122 | |start=120877122 | ||
|start_of_center_position=120877126 | |start_of_center_position=120877126 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000312189.10 | + | |transcript_name=ENST00000373896.8 ENST00000312189.10 NM_015651 NM_001286843 NM_001009936 AK122744 BC022374 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102309.1 | |tss_id=hg_102309.1 | ||
Revision as of 17:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120877126 |
|---|---|
| End of the center position in the TSS region: | 120877127 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373896.8 ENST00000312189.10 NM_015651 NM_001286843 NM_001009936 AK122744 BC022374 |
|---|---|
| Distance: | -57 |
| Num_trans: | 10 |
| All_trans: | ENST00000373896.8:-57 ENST00000312189.10:-57 NM_015651:-57 NM_001286843:-57 NM_001009936:-57 AK122744:-57 BC022374:-57 AK303433:-87 ENST00000436309.5:97 BC108663:-158 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_001286843 |
| Entrez ID: | 26147 |
| Nearest Unigene: | Hs.460124 |
| Nearest Refseq: | NM_015651 |
| Nearest Ensembl: | ENSG00000119403 |
| Gene Name: | PHD finger protein 19 |
| Gene Alias: | MTF2L1|PCL3|TDRD19B |
| Gene Description: | PHD finger protein 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
