Difference between revisions of "TSS:Hg 102398.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AL117602:0 BC017227:9 | + | |all_trans=ENST00000259467.9:0 NM_005388:0 AL117602:0 BC017227:9 AF031463:-12 AK313429:-37 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=122828619 | |end=122828619 | ||
|end_of_center_position=122828580 | |end_of_center_position=122828580 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_005388 | |nearest_refseq=NM_005388 | ||
|nearest_unigene=Hs.271749 | |nearest_unigene=Hs.271749 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=122828539 | |start=122828539 | ||
|start_of_center_position=122828579 | |start_of_center_position=122828579 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AL117602 | + | |transcript_name=ENST00000259467.9 NM_005388 AL117602 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102398.1 | |tss_id=hg_102398.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q13371 |
}} | }} | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122828579 |
|---|---|
| End of the center position in the TSS region: | 122828580 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000259467.9 NM_005388 AL117602 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000259467.9:0 NM_005388:0 AL117602:0 BC017227:9 AF031463:-12 AK313429:-37 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_005388 |
| Entrez ID: | 5082 |
| Nearest Unigene: | Hs.271749 |
| Nearest Refseq: | NM_005388 |
| Nearest Ensembl: | ENSG00000136940 |
| Gene Name: | phosducin like |
| Gene Alias: | PhLP |
| Gene Description: | phosducin like |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
