Difference between revisions of "TSS:Hg 102401.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RNF164= | |RNF164= | ||
| − | |all_trans= | + | |all_trans=ENST00000357244.7:102 NM_001354482:102 NM_001354478:102 NM_001354479:102 NM_001100588:102 NM_018835:102 NM_001354486:102 ENST00000423239.6:120 ENST00000478216.1:181 LF205679:213 MA441256:213 ENST00000498479.5:239 AL833177:239 ENST00000335387.9:246 BC044642:246 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=102 |
| − | |distance_to_tss=- | + | |distance_to_tss=-117 |
|end=122905491 | |end=122905491 | ||
|end_of_center_position=122905476 | |end_of_center_position=122905476 | ||
|entrez_id=54542 | |entrez_id=54542 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=MNAB | + | |gene_alias=MNAB{{!}}RNF164 |
|gene_description=ring finger and CCCH-type domains 2 | |gene_description=ring finger and CCCH-type domains 2 | ||
|gene_id=54542 | |gene_id=54542 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:21461 | |hgnc_mgi_id=HGNC:21461 | ||
|nearest_ensembl=ENSG00000056586 | |nearest_ensembl=ENSG00000056586 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001354478 |
|nearest_refseq=NM_018835 | |nearest_refseq=NM_018835 | ||
|nearest_unigene=Hs.533499 | |nearest_unigene=Hs.533499 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=122905460 | |start=122905460 | ||
|start_of_center_position=122905475 | |start_of_center_position=122905475 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000357244.7 NM_001354482 NM_001354478 NM_001354479 NM_001100588 NM_018835 NM_001354486 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102401.1 | |tss_id=hg_102401.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9HBD1 | + | |uniprot_id=A0A024R899 Q9HBD1 |
}} | }} | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 122905475 |
|---|---|
| End of the center position in the TSS region: | 122905476 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357244.7 NM_001354482 NM_001354478 NM_001354479 NM_001100588 NM_018835 NM_001354486 |
|---|---|
| Distance: | 102 |
| Num_trans: | 15 |
| All_trans: | ENST00000357244.7:102 NM_001354482:102 NM_001354478:102 NM_001354479:102 NM_001100588:102 NM_018835:102 NM_001354486:102 ENST00000423239.6:120 ENST00000478216.1:181 LF205679:213 MA441256:213 ENST00000498479.5:239 AL833177:239 ENST00000335387.9:246 BC044642:246 |
TATA-Box annotation
| Distance to TSS: | -117 |
|---|---|
| Nearest PromoterID: | NM_001354478 |
| Entrez ID: | 54542 |
| Nearest Unigene: | Hs.533499 |
| Nearest Refseq: | NM_018835 |
| Nearest Ensembl: | ENSG00000056586 |
| Gene Name: | ring finger and CCCH-type domains 2 |
| Gene Alias: | MNAB|RNF164 |
| Gene Description: | ring finger and CCCH-type domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
