Difference between revisions of "TSS:Hg 102446.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |GCNF= | ||
| + | |GCNF1= | ||
| + | |NR61= | ||
| + | |RTR= | ||
| + | |all_trans=U64876:15 U80802:-57 X99975:-58 ENST00000344523.8:-68 ENST00000373584.7:-78 AF004291:-78 S83309:-78 HQ692858:90 HQ709185:90 ENST00000416460.6:-91 BC030600:-91 BC042395:-91 BC042406:-91 ENST00000487099.7:-92 NM_033334:-92 NM_001489:-92 NM_001278546:-92 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| − | |distance_to_tss= | + | |distance=15 |
| + | |distance_to_tss=97 | ||
| + | |end=124771219 | ||
| + | |end_of_center_position=124771214 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=CT150 | + | |gene_alias=CT150{{!}}GCNF{{!}}GCNF1{{!}}NR61{{!}}RTR{{!}}hGCNF{{!}}hRTR |
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
|gene_name=NR6A1 | |gene_name=NR6A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hGCNF= | ||
| + | |hRTR= | ||
|nearest_ensembl=ENSG00000148200 | |nearest_ensembl=ENSG00000148200 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001278546 |
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=124771208 | ||
| + | |start_of_center_position=124771213 | ||
| + | |strand=- | ||
| + | |transcript_name=U64876 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102446.1 | |tss_id=hg_102446.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124771213 |
|---|---|
| End of the center position in the TSS region: | 124771214 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U64876 |
|---|---|
| Distance: | 15 |
| Num_trans: | 17 |
| All_trans: | U64876:15 U80802:-57 X99975:-58 ENST00000344523.8:-68 ENST00000373584.7:-78 AF004291:-78 S83309:-78 HQ692858:90 HQ709185:90 ENST00000416460.6:-91 BC030600:-91 BC042395:-91 BC042406:-91 ENST00000487099.7:-92 NM_033334:-92 NM_001489:-92 NM_001278546:-92 |
TATA-Box annotation
| Distance to TSS: | 97 |
|---|---|
| Nearest PromoterID: | NM_001278546 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | NR6A1 |
| Gene Alias: | CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
