Difference between revisions of "TSS:Hg 102484.1"
From referenceTSS
| Line 3: | Line 3: | ||
|HEL-S-89n= | |HEL-S-89n= | ||
|MIF2= | |MIF2= | ||
| − | |all_trans=ENST00000324460. | + | |all_trans=ENST00000324460.7:0 ENST00000680640.1:0 ENST00000679475.1:0 ENST00000680494.1:0 ENST00000681774.1:0 NM_005347:0 BC020235:0 LP895631:0 X87949:0 AK293604:0 ENST00000679355.1:-16 ENST00000681045.1:-16 ENST00000681424.1:-16 ENST00000681675.1:-16 ENST00000681544.1:-16 ENST00000680272.1:-16 ENST00000680257.1:-30 ENST00000680032.1:-30 ENST00000681540.1:-30 ENST00000680234.1:-30 AJ271729:189 EU794617:189 AF216292:202 DQ892173:202 DQ895368:202 AB527282:202 AF188611:258 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=125241352 | |end=125241352 | ||
|end_of_center_position=125241340 | |end_of_center_position=125241340 | ||
|entrez_id=3309 | |entrez_id=3309 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=BIP | + | |gene_alias=BIP{{!}}GRP78{{!}}HEL-S-89n{{!}}MIF2 |
|gene_description=heat shock protein family A (Hsp70) member 5 | |gene_description=heat shock protein family A (Hsp70) member 5 | ||
|gene_id=3309 | |gene_id=3309 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_005347 | |nearest_refseq=NM_005347 | ||
|nearest_unigene=Hs.743241 | |nearest_unigene=Hs.743241 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=125241327 | |start=125241327 | ||
|start_of_center_position=125241339 | |start_of_center_position=125241339 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-36(GGGTATATAAGC,-,0.00) |
| − | |transcript_name=ENST00000324460. | + | |transcript_name=ENST00000324460.7 ENST00000680640.1 ENST00000679475.1 ENST00000680494.1 ENST00000681774.1 NM_005347 BC020235 LP895631 X87949 AK293604 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102484.1 | |tss_id=hg_102484.1 | ||
Revision as of 17:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 125241339 |
|---|---|
| End of the center position in the TSS region: | 125241340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000324460.7 ENST00000680640.1 ENST00000679475.1 ENST00000680494.1 ENST00000681774.1 NM_005347 BC020235 LP895631 X87949 AK293604 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000324460.7:0 ENST00000680640.1:0 ENST00000679475.1:0 ENST00000680494.1:0 ENST00000681774.1:0 NM_005347:0 BC020235:0 LP895631:0 X87949:0 AK293604:0 ENST00000679355.1:-16 ENST00000681045.1:-16 ENST00000681424.1:-16 ENST00000681675.1:-16 ENST00000681544.1:-16 ENST00000680272.1:-16 ENST00000680257.1:-30 ENST00000680032.1:-30 ENST00000681540.1:-30 ENST00000680234.1:-30 AJ271729:189 EU794617:189 AF216292:202 DQ892173:202 DQ895368:202 AB527282:202 AF188611:258 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_005347 |
| Entrez ID: | 3309 |
| Nearest Unigene: | Hs.743241 |
| Nearest Refseq: | NM_005347 |
| Nearest Ensembl: | ENSG00000044574 |
| Gene Name: | heat shock protein family A (Hsp70) member 5 |
| Gene Alias: | BIP|GRP78|HEL-S-89n|MIF2 |
| Gene Description: | heat shock protein family A (Hsp70) member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGTATATAAGC,-,0.00) |
