Difference between revisions of "TSS:Hg 102518.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-84923 | |distance_to_tss=-84923 | ||
|end=126529521 | |end=126529521 | ||
| Line 9: | Line 9: | ||
|entrez_id=4010 | |entrez_id=4010 | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
| − | |gene_alias=LMX1.2 | + | |gene_alias=LMX1.2{{!}}NPS1 |
|gene_description=LIM homeobox transcription factor 1 beta | |gene_description=LIM homeobox transcription factor 1 beta | ||
|gene_name=LMX1B | |gene_name=LMX1B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000136944 | |nearest_ensembl=ENSG00000136944 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174146 |
|nearest_refseq=NM_002316 | |nearest_refseq=NM_002316 | ||
|nearest_unigene=Hs.129133 | |nearest_unigene=Hs.129133 | ||
| Line 22: | Line 22: | ||
|start_of_center_position=126529519 | |start_of_center_position=126529519 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-97(GGCTTTTTAAAA,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 126529519 |
|---|---|
| End of the center position in the TSS region: | 126529520 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -84923 |
|---|---|
| Nearest PromoterID: | NM_001174146 |
| Entrez ID: | 4010 |
| Nearest Unigene: | Hs.129133 |
| Nearest Refseq: | NM_002316 |
| Nearest Ensembl: | ENSG00000136944 |
| Gene Name: | LMX1B |
| Gene Alias: | LMX1.2|NPS1 |
| Gene Description: | LIM homeobox transcription factor 1 beta |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -97(GGCTTTTTAAAA,-,0.00) |
