Difference between revisions of "TSS:Hg 102523.1"
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{{TSSDetail | {{TSSDetail | ||
|NPS1= | |NPS1= | ||
| − | |all_trans=ENST00000451449.2 | + | |all_trans=ENST00000451449.2:95 ENST00000425370.1:96 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 7: | Line 7: | ||
|distance_to_tss=-645 | |distance_to_tss=-645 | ||
|end=126613801 | |end=126613801 | ||
| + | |end_of_center_position=126613798 | ||
|entrez_id=4010 | |entrez_id=4010 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=LMX1.2 | + | |gene_alias=LMX1.2{{!}}NPS1 |
|gene_description=LIM homeobox transcription factor 1 beta | |gene_description=LIM homeobox transcription factor 1 beta | ||
|gene_name=LMX1B | |gene_name=LMX1B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000136944 | |nearest_ensembl=ENSG00000136944 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174146 |
|nearest_refseq=NM_002316 | |nearest_refseq=NM_002316 | ||
|nearest_unigene=Hs.129133 | |nearest_unigene=Hs.129133 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=126613794 | |start=126613794 | ||
| + | |start_of_center_position=126613797 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000451449.2 | + | |transcript_name=ENST00000451449.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102523.1 | |tss_id=hg_102523.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 126613797 |
|---|---|
| End of the center position in the TSS region: | 126613798 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000451449.2 |
|---|---|
| Distance: | 95 |
| Num_trans: | 2 |
| All_trans: | ENST00000451449.2:95 ENST00000425370.1:96 |
TATA-Box annotation
| Distance to TSS: | -645 |
|---|---|
| Nearest PromoterID: | NM_001174146 |
| Entrez ID: | 4010 |
| Nearest Unigene: | Hs.129133 |
| Nearest Refseq: | NM_002316 |
| Nearest Ensembl: | ENSG00000136944 |
| Gene Name: | LMX1B |
| Gene Alias: | LMX1.2|NPS1 |
| Gene Description: | LIM homeobox transcription factor 1 beta |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
