Difference between revisions of "TSS:Hg 10253.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000400904.7 | + | |all_trans=ENST00000400904.7:-12 ENST00000377263.6:47 NM_001012329:47 NM_020248:47 BC014300:75 BC046920:77 BC035794:90 AB021262:92 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=-12 | |distance=-12 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-51 |
|end=9910324 | |end=9910324 | ||
|end_of_center_position=9910320 | |end_of_center_position=9910320 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_020248 | |nearest_refseq=NM_020248 | ||
|nearest_unigene=Hs.463759 | |nearest_unigene=Hs.463759 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=9910315 | |start=9910315 | ||
|start_of_center_position=9910319 | |start_of_center_position=9910319 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000400904.7 | + | |transcript_name=ENST00000400904.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10253.1 | |tss_id=hg_10253.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R4D7 | + | |uniprot_id=A0A024R4D7 |
}} | }} | ||
Revision as of 17:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9910319 |
|---|---|
| End of the center position in the TSS region: | 9910320 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000400904.7 |
|---|---|
| Distance: | -12 |
| Num_trans: | 8 |
| All_trans: | ENST00000400904.7:-12 ENST00000377263.6:47 NM_001012329:47 NM_020248:47 BC014300:75 BC046920:77 BC035794:90 AB021262:92 |
TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NM_001012329 |
| Entrez ID: | 56998 |
| Nearest Unigene: | Hs.463759 |
| Nearest Refseq: | NM_020248 |
| Nearest Ensembl: | ENSG00000178585 |
| Gene Name: | catenin beta interacting protein 1 |
| Gene Alias: | ICAT |
| Gene Description: | catenin beta interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.850746 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
