Difference between revisions of "TSS:Hg 102542.1"
From referenceTSS
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|MINERVA= | |MINERVA= | ||
|OC58= | |OC58= | ||
| + | |all_trans=LF346864:30 MA582441:30 LF346863:-41 MA582440:-41 LF346865:150 MA582442:150 LF346866:332 MA582443:332 | ||
|bA356B19.6= | |bA356B19.6= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=30 |
| − | |distance_to_tss= | + | |distance_to_tss=46276 |
|end=127522815 | |end=127522815 | ||
| + | |end_of_center_position=127522797 | ||
|entrez_id=64855 | |entrez_id=64855 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=C9orf88 | + | |gene_alias=C9orf88{{!}}FAM129B{{!}}MEG-3{{!}}MINERVA{{!}}OC58{{!}}bA356B19.6 |
| − | |gene_description= | + | |gene_description=niban apoptosis regulator 2 |
| − | |gene_name= | + | |gene_name=NIBAN2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000136830 | |nearest_ensembl=ENSG00000136830 | ||
| Line 19: | Line 21: | ||
|nearest_refseq=NM_022833 | |nearest_refseq=NM_022833 | ||
|nearest_unigene=Hs.522401 | |nearest_unigene=Hs.522401 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=127522778 | |start=127522778 | ||
| + | |start_of_center_position=127522796 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF346864 MA582441 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102542.1 | |tss_id=hg_102542.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:06, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 127522796 |
|---|---|
| End of the center position in the TSS region: | 127522797 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF346864 MA582441 |
|---|---|
| Distance: | 30 |
| Num_trans: | 8 |
| All_trans: | LF346864:30 MA582441:30 LF346863:-41 MA582440:-41 LF346865:150 MA582442:150 LF346866:332 MA582443:332 |
TATA-Box annotation
| Distance to TSS: | 46276 |
|---|---|
| Nearest PromoterID: | NM_022833 |
| Entrez ID: | 64855 |
| Nearest Unigene: | Hs.522401 |
| Nearest Refseq: | NM_022833 |
| Nearest Ensembl: | ENSG00000136830 |
| Gene Name: | NIBAN2 |
| Gene Alias: | C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 |
| Gene Description: | niban apoptosis regulator 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
