Difference between revisions of "TSS:Hg 102559.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PTH1= | |PTH1= | ||
| − | |all_trans=ENST00000335223.5:0 ENST00000543175. | + | |all_trans=ENST00000335223.5:0 ENST00000543175.5:0 ENST00000416214.1:0 NM_001345980:0 NM_001345979:0 NM_001345978:0 NM_001345977:0 NM_001002913:0 LF205651:0 MA441228:0 BC032117:0 BC047012:0 HQ257888:0 KJ895525:0 ENST00000414832.2:3 LF346844:17 MA582421:17 ENST00000456267.5:30 ENST00000423807.5:-321 BC015230:-321 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|end=127715682 | |end=127715682 | ||
|end_of_center_position=127715658 | |end_of_center_position=127715658 | ||
|entrez_id=138428 | |entrez_id=138428 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C9orf115 | + | |gene_alias=C9orf115{{!}}PTH1 |
|gene_description=peptidyl-tRNA hydrolase 1 homolog | |gene_description=peptidyl-tRNA hydrolase 1 homolog | ||
|gene_id=138428 | |gene_id=138428 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:27039 | |hgnc_mgi_id=HGNC:27039 | ||
|nearest_ensembl=ENSG00000187024 | |nearest_ensembl=ENSG00000187024 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001002913 |
|nearest_refseq=NM_001002913 | |nearest_refseq=NM_001002913 | ||
|nearest_unigene=Hs.653265 | |nearest_unigene=Hs.653265 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=127715633 | |start=127715633 | ||
|start_of_center_position=127715657 | |start_of_center_position=127715657 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000335223.5 ENST00000543175. | + | |transcript_name=ENST00000335223.5 ENST00000543175.5 ENST00000416214.1 NM_001345980 NM_001345979 NM_001345978 NM_001345977 NM_001002913 LF205651 MA441228 BC032117 BC047012 HQ257888 KJ895525 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102559.1 | |tss_id=hg_102559.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A096LP34 Q86Y79 | + | |uniprot_id=A0A096LP34 A0A286YF52 C9J7Z1 Q86Y79 |
}} | }} | ||
Revision as of 17:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127715657 |
|---|---|
| End of the center position in the TSS region: | 127715658 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000335223.5 ENST00000543175.5 ENST00000416214.1 NM_001345980 NM_001345979 NM_001345978 NM_001345977 NM_001002913 LF205651 MA441228 BC032117 BC047012 HQ257888 KJ895525 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000335223.5:0 ENST00000543175.5:0 ENST00000416214.1:0 NM_001345980:0 NM_001345979:0 NM_001345978:0 NM_001345977:0 NM_001002913:0 LF205651:0 MA441228:0 BC032117:0 BC047012:0 HQ257888:0 KJ895525:0 ENST00000414832.2:3 LF346844:17 MA582421:17 ENST00000456267.5:30 ENST00000423807.5:-321 BC015230:-321 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001002913 |
| Entrez ID: | 138428 |
| Nearest Unigene: | Hs.653265 |
| Nearest Refseq: | NM_001002913 |
| Nearest Ensembl: | ENSG00000187024 |
| Gene Name: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Alias: | C9orf115|PTH1 |
| Gene Description: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
